Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Forward (+)

46082876 .. 46085384

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGGATCAAGATCATCTTCAGTGAAAGTCCTGGTGCTGATTTTATCACAGCAAACAACTTCTCCTATGCCATTGTTGTAGTTGGAGAGCTCCCTTACGCGGAGACGAACGGGGACAGTTTAAATTTGACAATTGCACAACCGGGTCCAAGCACCATCACCAATGTATGTGGCAAAGTCAAGTGTGTGGTTGTAGTAATCTCTGGCCGTCCTGTTGTGATCGAGCCCTACATTTCATTGATGAATGCTCTTGTGGCTGCATGCATGGCTACCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

93

Amino Acids

9.78

Weight (kDa)

4.66

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	17 - 89	3e-07	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	31, 272
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	93, 228
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	33, 274
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	3 cut(s)	33, 144, 274
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	3 cut(s)	33, 144, 274
BpuMI	CCSGG	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	33, 274
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	93, 228
Bsp143I	GATC	3 cut(s)	6, 12, 219
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	14
BssMI	GATC	3 cut(s)	6, 12, 219
Bst2UI	CCWGG	2 cut(s)	33, 274
Bst4CI	ACNGT	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	9, 15, 222
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	6, 12, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 266
BstNI	CCWGG	2 cut(s)	33, 274
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	31, 142, 272
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	146
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	2 cut(s)	261, 265
CviJI	RGCY	5 cut(s)	91, 207, 226, 257, 269
CviKI_1	RGCY	5 cut(s)	91, 207, 226, 257, 269
DpnI	GATC	3 cut(s)	8, 14, 221
DpnII	GATC	3 cut(s)	6, 12, 219
DraI	TTTAAA	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	93, 228
Eco47I	GGWCC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	31, 272
EcoT22I	ATGCAT	1 cut(s)	266
EcoT38I	GRGCYC	2 cut(s)	93, 228
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	2 cut(s)	264, 268
FaiI	YATR	4 cut(s)	69, 169, 262, 266
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	2 cut(s)	260, 264
Fnu4HI	GCNGC	1 cut(s)	258
FriOI	GRGCYC	2 cut(s)	93, 228
Fsp4HI	GCNGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	2 cut(s)	264, 268
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	137, 260, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 266
Hsp92II	CATG	2 cut(s)	264, 268
Kzo9I	GATC	3 cut(s)	6, 12, 219
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	6 cut(s)	18, 45, 156, 189, 225, 259
Lsp1109I	GCAGC	1 cut(s)	244
MalI	GATC	3 cut(s)	8, 14, 221
MboI	GATC	3 cut(s)	6, 12, 219
MboII	GAAGA	1 cut(s)	10
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	2 cut(s)	93, 228
MluCI	AATT	2 cut(s)	124, 132
MmeI	TCCRAC	1 cut(s)	64
Mph1103I	ATGCAT	1 cut(s)	266
MseI	TTAA	1 cut(s)	122
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	3 cut(s)	33, 144, 274
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	2 cut(s)	33, 274
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	254, 266
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	6, 12, 219
NlaIII	CATG	2 cut(s)	264, 268
NlaIV	GGNNCC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	1 cut(s)	264
PaeI	GCATGC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	31, 272
PspGI	CCWGG	2 cut(s)	31, 272
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	6, 12, 219
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	33, 144, 274
SduI	GDGCHC	2 cut(s)	93, 228
SetI	ASST	2 cut(s)	93, 275
SinI	GGWCC	1 cut(s)	146
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	2 cut(s)	124, 132
SsiI	CCGC	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	3 cut(s)	31, 142, 272
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	124, 132
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	225, 257
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.