Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

28213850 .. 28214973

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACATCCATTATCTCAGGCTTGCAGGGGAAGCCACCCCAAGGGCATGAAAATGGTTACCCTTTTATAATGGGAAGAAACAACAACACTATTGCATGTGCCGATGGGGGTACACAGGAAGGTGTAAATGATGGAAATACCATATCATCTTACGATGACTTAGAGAGGATTCATATGGCACCTTATCTGGACTGCATTTCTCAAGGAGTTTCCACTATTATGGCATCTTATTCCAGCTGGAATGGAAATAGACTACATGCTGATCGTCTTCTCCTGACTGAAATCTTGAAAGAAAAGCTAGGATTTAAGGGAATTGTGCTTTCTGACTGGGATGGTATTGAAACACTCAGTGAGCCTCAAGGGTCAAACTATCATTTCTGCATTTTATCTGCTGTCAATGCTGGAATTGACATGTTTATGATGCCTTTCAGATTTGAAAAATTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

149

Amino Acids

16.45

Weight (kDa)

4.89

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	34 - 142	1.6e-22	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	3 cut(s)	289, 341, 437
AluBI	AGCT	2 cut(s)	237, 298
AluI	AGCT	2 cut(s)	237, 298
ApoI	RAATTY	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	260
BccI	CCATC	3 cut(s)	98, 125, 326
BfaI	CTAG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	233, 411
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	186, 342
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	2 cut(s)	5, 337
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	30, 361
BseNI	ACTGG	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	29, 360
BspLI	GGNNCC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	16, 160, 347
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	5, 337
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 398
BstNSI	RCATGY	3 cut(s)	99, 260, 415
BstPI	GGTNACC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	5, 337
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	4 cut(s)	47, 96, 257, 412
CviJI	RGCY	5 cut(s)	21, 34, 237, 298, 355
CviKI_1	RGCY	5 cut(s)	21, 34, 237, 298, 355
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	3 cut(s)	16, 160, 347
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DraIII	CACNNNGTG	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	50, 99, 260, 415
FatI	CATG	4 cut(s)	46, 95, 256, 411
FauNDI	CATATG	1 cut(s)	174
FokI	GGATG	1 cut(s)	344
FspBI	CTAG	1 cut(s)	299
Hin1II	CATG	4 cut(s)	50, 99, 260, 415
HinfI	GANTC	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	325, 431
Hpy188III	TCNNGA	3 cut(s)	188, 274, 286
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	25, 95, 195, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 398
HpyF3I	CTNAG	3 cut(s)	16, 160, 347
Hsp92II	CATG	4 cut(s)	50, 99, 260, 415
Kzo9I	GATC	1 cut(s)	262
LpnPI	CCDG	9 cut(s)	3, 11, 101, 173, 223, 247, 287, 313, 387
LweI	GCATC	2 cut(s)	233, 411
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	87, 260
MluCI	AATT	3 cut(s)	312, 405, 440
MnlI	CCTC	2 cut(s)	159, 366
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	3 cut(s)	51, 218, 416
MspA1I	CMGCKG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	31, 398
NdeI	CATATG	1 cut(s)	174
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	4 cut(s)	50, 99, 260, 415
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	3 cut(s)	99, 260, 415
PciI	ACATGT	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	169
PscI	ACATGT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	68
PspEI	GGTNACC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	3 cut(s)	51, 218, 416
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	1 cut(s)	262
SetI	ASST	4 cut(s)	124, 184, 239, 300
SfaNI	GCATC	2 cut(s)	233, 411
SmiMI	CAYNNNNRTG	3 cut(s)	51, 218, 416
SmlI	CTYRAG	2 cut(s)	201, 357
SmoI	CTYRAG	2 cut(s)	201, 357
Sse9I	AATT	3 cut(s)	312, 405, 440
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	40
TasI	AATT	3 cut(s)	312, 405, 440
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	63, 161
TspRI	CASTG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	3 cut(s)	99, 260, 415
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.