pycom14g00230

Lysosomal beta glucosidase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
137519 .. 138238
720 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g00230.2

Sequence Viewer

Length: 423 bp
ATGCAGACAATCTTGGTTATCAGTTTGAATGCTTTCTCGTATGCCATCGTTGTGGTAGGAGAACACCCTTATGCCGAGACAGTTGGTGACAGCTTAAATTTGACGATACCTGACCCTGGCCCGAGCACCATCACAAATGTTTGCGGGGCTGTGAAATGCGTTGTCATCATCCTCTCTGGTCCTCCTGTTGTGATTCAACCATTTGTTCCGCTGATTGACACTCTTGTCGCAGCTTGGCTTCCAGGAACTGAAGGTCAAGGGGTGGCTGATGTTTTATTTGGTGACTACGGCTTTACTGGCAAGCTTTCTAGAACCTGGTTCAAAACGGTTGATCAACTACCTATGAATGTTGGGGATGCACACTATGACCCTCTCTTCCCCTTTGGATTTGGGCTCACTACAACACCCAAAAAATCCAACTGA

Protein Analysis

141

Amino Acids

14.88

Weight (kDa)

4.6

Isoelectric Point (pI)

23.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AciI CCGC 2 cut(s) 144, 209
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 3 cut(s) 28, 197, 322
AjnI CCWGG 3 cut(s) 115, 241, 314
AluBI AGCT 3 cut(s) 93, 233, 304
AluI AGCT 3 cut(s) 93, 233, 304
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 121
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 119, 179
AsuHPI GGTGA 2 cut(s) 98, 293
AvaI CYCGRG 1 cut(s) 121
AvaII GGWCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 53, 137
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 3 cut(s) 117, 243, 316
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 309
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 3 cut(s) 117, 243, 316
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 119, 179
BmrFI CCNGG 3 cut(s) 117, 243, 316
BmsI GCATC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 3 cut(s) 117, 243, 316
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 2 cut(s) 168, 361
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 128, 396
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 2 cut(s) 144, 209
BspANI GGCC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 117, 243, 316
Bst4CI ACNGT 2 cut(s) 82, 328
Bst6I CTCTTC 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 302
BstF5I GGATG 2 cut(s) 168, 361
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 3 cut(s) 117, 243, 316
BstSCI CCNGG 3 cut(s) 115, 241, 314
BstV1I GCAGC 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 168, 361
Cac8I GCNNGC 1 cut(s) 302
CaiI CAGNNNCTG 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 119, 179
CsiI ACCWGGT 1 cut(s) 314
CviJI RGCY 9 cut(s) 93, 120, 149, 233, 238, 266, 291, 304, 394
CviKI_1 RGCY 9 cut(s) 93, 120, 149, 233, 238, 266, 291, 304, 394
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 121
EcoRII CCWGG 3 cut(s) 115, 241, 314
EcoT38I GRGCYC 1 cut(s) 396
FaiI YATR 4 cut(s) 42, 72, 344, 366
FauI CCCGC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 2 cut(s) 155, 368
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 309
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 193
HphI GGTGA 2 cut(s) 98, 293
Hpy188III TCNNGA 1 cut(s) 309
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 2 cut(s) 82, 328
HpyCH4V TGCA 2 cut(s) 4, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 1 cut(s) 331
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 1 cut(s) 346
MabI ACCWGGT 1 cut(s) 314
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 86, 281
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 128, 396
MluCI AATT 1 cut(s) 97
MnlI CCTC 3 cut(s) 182, 192, 381
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 2 cut(s) 50, 69
MspA1I CMGCKG 1 cut(s) 211
MspR9I CCNGG 3 cut(s) 117, 243, 316
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 3 cut(s) 117, 243, 316
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 1 cut(s) 331
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 86, 281
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 193
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 115, 241, 314
PspGI CCWGG 3 cut(s) 115, 241, 314
PspPI GGNCC 2 cut(s) 119, 179
PstNI CAGNNNCTG 1 cut(s) 248
RseI CAYNNNNRTG 2 cut(s) 50, 69
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 119, 179
ScrFI CCNGG 3 cut(s) 117, 243, 316
SduI GDGCHC 2 cut(s) 128, 396
SetI ASST 7 cut(s) 95, 112, 235, 256, 306, 317, 343
SexAI ACCWGGT 1 cut(s) 314
SfaNI GCATC 1 cut(s) 346
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 50, 69
Sse9I AATT 1 cut(s) 97
SsiI CCGC 2 cut(s) 144, 209
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 115, 241, 314
TaaI ACNGT 2 cut(s) 82, 328
TasI AATT 1 cut(s) 97
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseFI GTSAC 2 cut(s) 86, 281
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 2 cut(s) 86, 281
TspDTI ATGAA 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.