Rh5BG542700

Belongs to the glycosyl hydrolase 3 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
86219207 .. 86241256
22050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG542700.1

Sequence Viewer

Length: 786 bp
ATGGAAACACTTGAGAACTTAATTTGCATATACAGAAACCCAAATGAACCCATTGAAGCTCAAGTCAAGGACCTCCTTTCTCGCATGACTTTGAAAGAAAAGGTGGGGCAAATGACCCAGATAGAACGTCAGGTCGCTACCCCTTCTGCTATTAAAGATTTTTCAATCGAGGTGTGCACACTGGAAACCCGGCTCCGGATTCCATTGATATATGGGATTGATGCTGTTCATGGGAACAATAGCGTCTATGGTGCCACTATATTTCCTCATAATGTTGGTCTTGGGGCTACCAGAGGTGCGGATTTGGCTCAAAGGATTGGTGAGGCAACTGCTCTTGAAGTCAGGGCCAGCGGGATTCACTACACTTTTGCTCCCTGTGTAGCTGTAAGTCATTGTGAATGCACAACCATCTTGGAAGCTATCAAGAAGGCAGTTGGAGAGGAAACAGAAAGAATTCATGAGCAACTGGCATCGACGGATGCCCTAGCACGTAAAGATATCTCTTTTGCAGTTGTTGCTGTTGGTGATAGTACATATGCTGAATGCAAAGGCGACAACTTGGAGCTTGTGATTCCTTTTAATGGACCGATTGAAGGAGAGGGAATTGCAGATGTTATCTTTGGAGATTGTAACTTGGAGCGCAAGCTACCGGTGACGTGGTTTAAAAGTGTTGAACGGCTCCCATTGGATGTTGGAAGCAACTCATATGACCCTTTATATCCTCTTGGGTATGCATTGACATGTGATACAGAGAAAGTTATACACCACACAGATTTTGATGAATGA

Protein Analysis

261

Amino Acids

28.64

Weight (kDa)

4.84

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 21 - 132 4.1e-19 Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C PF01915 193 - 247 5.2e-07 Glycosyl hydrolase family 3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 195
AciI CCGC 2 cut(s) 299, 351
AcsI RAATTY 1 cut(s) 453
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 3 cut(s) 195, 581, 593
AflIII ACRYGT 1 cut(s) 740
AgeI ACCGGT 1 cut(s) 649
AgsI TTSAA 6 cut(s) 56, 94, 165, 338, 593, 674
AjiI CACGTC 1 cut(s) 657
AluBI AGCT 5 cut(s) 59, 383, 419, 565, 646
AluI AGCT 5 cut(s) 59, 383, 419, 565, 646
Alw21I GWGCWC 1 cut(s) 179
Alw44I GTGCAC 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 195
AoxI GGCC 1 cut(s) 345
ApaLI GTGCAC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 453
AsiGI ACCGGT 1 cut(s) 649
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 642
AspS9I GGNCC 3 cut(s) 70, 345, 584
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 3 cut(s) 332, 536, 664
AvaII GGWCC 2 cut(s) 70, 584
BaeGI GKGCMC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 1 cut(s) 416
BceAI ACGGC 1 cut(s) 692
BcnI CCSGG 1 cut(s) 190
BfaI CTAG 1 cut(s) 485
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 2 cut(s) 70, 584
BmgBI CACGTC 1 cut(s) 657
BmgT120I GGNCC 3 cut(s) 70, 345, 584
BmiI GGNNCC 3 cut(s) 194, 253, 680
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 3 cut(s) 211, 469, 479
BpuEI CTTGAG 2 cut(s) 32, 45
BpuMI CCSGG 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 491
BsaWI WCCGGW 2 cut(s) 195, 649
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 581, 593
Bse118I RCCGGY 1 cut(s) 649
Bse1I ACTGG 2 cut(s) 186, 471
BseAI TCCGGA 1 cut(s) 195
BseGI GGATG 2 cut(s) 484, 694
BseLI CCNNNNNNNGG 3 cut(s) 195, 581, 593
BseNI ACTGG 2 cut(s) 186, 471
BseSI GKGCMC 1 cut(s) 179
BshFI GGCC 1 cut(s) 347
BshNI GGYRCC 1 cut(s) 251
BshTI ACCGGT 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 3 cut(s) 190, 196, 650
BslI CCNNNNNNNGG 3 cut(s) 195, 581, 593
BsmI GAATGC 2 cut(s) 404, 548
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 195
BspACI CCGC 2 cut(s) 299, 351
BspANI GGCC 1 cut(s) 347
BspEI TCCGGA 1 cut(s) 195
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 194, 253, 680
BspT107I GGYRCC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 649
BsrI ACTGG 2 cut(s) 186, 471
BssAI RCCGGY 1 cut(s) 649
BstAPI GCANNNNNTGC 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 349, 644
BstF5I GGATG 2 cut(s) 484, 694
BstHHI GCGC 1 cut(s) 642
BstMWI GCNNNNNNNGC 2 cut(s) 305, 515
BstNSI RCATGY 1 cut(s) 744
BstSCI CCNGG 1 cut(s) 188
BstSLI GKGCMC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 347
BtrI CACGTC 1 cut(s) 657
BtsCI GGATG 2 cut(s) 484, 694
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 349, 644
CciI TCATGA 1 cut(s) 457
CfoI GCGC 1 cut(s) 642
Cfr10I RCCGGY 1 cut(s) 649
Cfr13I GGNCC 3 cut(s) 70, 345, 584
CseI GACGC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 531
CspAI ACCGGT 1 cut(s) 649
CviAII CATG 4 cut(s) 85, 230, 458, 741
CviQI GTAC 1 cut(s) 531
DraI TTTAAA 1 cut(s) 664
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 70, 584
EcoO109I RGGNCCY 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 453
EcoRV GATATC 1 cut(s) 499
EcoT22I ATGCAT 1 cut(s) 736
FaeI CATG 4 cut(s) 88, 233, 461, 744
FatI CATG 4 cut(s) 84, 229, 457, 740
FauI CCCGC 1 cut(s) 344
FauNDI CATATG 2 cut(s) 535, 706
FokI GGATG 2 cut(s) 491, 701
FspBI CTAG 1 cut(s) 485
GlaI GCGC 1 cut(s) 641
HaeIII GGCC 1 cut(s) 347
HapII CCGG 3 cut(s) 190, 196, 650
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 642
Hin1II CATG 4 cut(s) 88, 233, 461, 744
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HinfI GANTC 3 cut(s) 199, 355, 571
HpaII CCGG 3 cut(s) 190, 196, 650
HphI GGTGA 3 cut(s) 332, 536, 664
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 4 cut(s) 196, 335, 424, 458
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 153, 421, 587
HpyCH4IV ACGT 3 cut(s) 127, 490, 656
HpyCH4V TGCA 7 cut(s) 27, 177, 402, 509, 546, 608, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 515
HpySE526I ACGT 3 cut(s) 127, 490, 656
Hsp92II CATG 4 cut(s) 88, 233, 461, 744
HspAI GCGC 1 cut(s) 640
Kpn2I TCCGGA 1 cut(s) 195
LmnI GCTCC 5 cut(s) 198, 376, 562, 637, 684
LweI GCATC 3 cut(s) 211, 469, 479
MaeI CTAG 1 cut(s) 485
MaeII ACGT 3 cut(s) 127, 490, 656
MaeIII GTNAC 2 cut(s) 629, 652
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 21, 453, 603
MmeI TCCRAC 2 cut(s) 415, 673
MnlI CCTC 8 cut(s) 83, 163, 276, 287, 316, 433, 592, 732
Mph1103I ATGCAT 1 cut(s) 736
MroI TCCGGA 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 4 cut(s) 20, 153, 579, 663
MslI CAYNNNNRTG 1 cut(s) 739
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 3 cut(s) 190, 196, 650
MspR9I CCNGG 1 cut(s) 190
Mva1269I GAATGC 2 cut(s) 404, 548
MwoI GCNNNNNNNGC 2 cut(s) 305, 515
NciI CCSGG 1 cut(s) 190
NdeI CATATG 2 cut(s) 535, 706
NlaIII CATG 4 cut(s) 88, 233, 461, 744
NlaIV GGNNCC 3 cut(s) 194, 253, 680
NmuCI GTSAC 1 cut(s) 652
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 1 cut(s) 744
PagI TCATGA 1 cut(s) 457
PciI ACATGT 1 cut(s) 740
PctI GAATGC 2 cut(s) 404, 548
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 3 cut(s) 199, 355, 571
PinAI ACCGGT 1 cut(s) 649
Ppu21I YACGTR 1 cut(s) 491
PpuMI RGGWCCY 1 cut(s) 70
PscI ACATGT 1 cut(s) 740
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 194, 253, 680
PspPI GGNCC 3 cut(s) 70, 345, 584
PspPPI RGGWCCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 739
SaqAI TTAA 4 cut(s) 20, 153, 579, 663
Sau96I GGNCC 3 cut(s) 70, 345, 584
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 3 cut(s) 211, 469, 479
SinI GGWCC 2 cut(s) 70, 584
SmiMI CAYNNNNRTG 1 cut(s) 739
SmlI CTYRAG 2 cut(s) 11, 60
SmoI CTYRAG 2 cut(s) 11, 60
Sse9I AATT 3 cut(s) 21, 453, 603
SsiI CCGC 2 cut(s) 299, 351
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 3 cut(s) 130, 493, 659
TaqI TCGA 2 cut(s) 168, 473
TaqII GACCGA 1 cut(s) 601
TasI AATT 3 cut(s) 21, 453, 603
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 3 cut(s) 199, 355, 571
Tru1I TTAA 4 cut(s) 20, 153, 579, 663
Tru9I TTAA 4 cut(s) 20, 153, 579, 663
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 652
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 3 cut(s) 60, 218, 446
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 1 cut(s) 186
VneI GTGCAC 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 70, 584
XapI RAATTY 1 cut(s) 453
XceI RCATGY 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.