Rroxscaffold_2G00103090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000625
Physical Location & Seq
Forward (+)
25562930 .. 25563407
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103090.1

Sequence Viewer

Length: 459 bp
ATGCAACCGCTTGATGAAGTATACTTGAGGTTTCCCGATAGTGTCGGAGTACCTCAACCGACGACCCAAGAAGGAGGCGGGTACCAAAGGGCTCGTGGCTCGGGGCCACCAAGAGCCGGTGTCGAGGAGGTAGCACCTTCGCGGGAGCGAGTAGATGAGTACTCGCCGGGGAGCGCCGGTCGCCGAGATTCGGTAGGCGTAAGGCGGTCCCCCCCGAGTCTTGGTAGGAAGGGTGGAGCATGGTGCCATAAACAAGCCCTCGGAGTCGGGGTTGAAGTGGAGATCTTCGTCGAGGCTGTTCAAAGAGGGCCGAACGGCGTCAAAGCAATACCGGTGCCGGGGCTCGCACGGTACAAGATGTTGTGTTGGAGCAGCCGGACGCCGTTTTTGGTGACGATATTGGTTGTCCGATGTCGCGCGAGGTTATTACTATCTACGCGGGGAAGCCGAGGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.42

Weight (kDa)

10.2

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47010 AT3G47040 AT3G47050
fragaria_vesca FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 81
AccB1I GGYRCC 3 cut(s) 81, 243, 334
AccI GTMKAC 1 cut(s) 21
AccII CGCG 4 cut(s) 142, 417, 419, 439
AciI CCGC 5 cut(s) 8, 78, 142, 205, 439
AcyI GRCGYC 2 cut(s) 318, 380
AfaI GTAC 4 cut(s) 51, 83, 161, 353
AfiI CCNNNNNNNGG 4 cut(s) 116, 190, 221, 338
AgeI ACCGGT 1 cut(s) 331
AgsI TTSAA 2 cut(s) 275, 302
Ama87I CYCGRG 2 cut(s) 100, 214
AoxI GGCC 2 cut(s) 104, 308
ApeKI GCWGC 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AsiGI ACCGGT 1 cut(s) 331
Asp718I GGTACC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 176, 419
AspS9I GGNCC 3 cut(s) 104, 207, 308
AsuC2I CCSGG 2 cut(s) 168, 339
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 2 cut(s) 100, 214
AvaII GGWCC 1 cut(s) 207
BanI GGYRCC 3 cut(s) 81, 243, 334
BanII GRGCYC 2 cut(s) 94, 345
BauI CACGAG 1 cut(s) 93
BbvI GCAGC 1 cut(s) 384
BceAI ACGGC 2 cut(s) 331, 367
BcnI CCSGG 2 cut(s) 168, 339
BfaI CTAG 1 cut(s) 457
BfoI RGCGCY 1 cut(s) 177
BglII AGATCT 1 cut(s) 282
BisI GCNGC 1 cut(s) 373
BlsI GCNGC 1 cut(s) 374
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 168, 339
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 2 cut(s) 100, 214
BmgT120I GGNCC 3 cut(s) 104, 207, 308
BmiI GGNNCC 5 cut(s) 83, 105, 209, 245, 336
BmrFI CCNGG 2 cut(s) 168, 339
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 2 cut(s) 168, 339
BsaHI GRCGYC 2 cut(s) 318, 380
BsaJI CCNNGG 4 cut(s) 167, 259, 338, 448
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 163, 193, 255, 285
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 190, 221, 338
Bse118I RCCGGY 3 cut(s) 116, 176, 331
BseDI CCNNGG 4 cut(s) 167, 259, 338, 448
BseLI CCNNNNNNNGG 4 cut(s) 116, 190, 221, 338
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 384
Bsh1236I CGCG 4 cut(s) 142, 417, 419, 439
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 106, 310
BshNI GGYRCC 3 cut(s) 81, 243, 334
BshTI ACCGGT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 181
BsiHKCI CYCGRG 2 cut(s) 100, 214
BsiSI CCGG 6 cut(s) 117, 167, 177, 332, 338, 376
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 4 cut(s) 116, 190, 221, 338
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 2 cut(s) 106, 310
BsoBI CYCGRG 2 cut(s) 100, 214
Bsp1286I GDGCHC 2 cut(s) 94, 345
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 5 cut(s) 8, 78, 142, 205, 439
BspANI GGCC 2 cut(s) 106, 310
BspFNI CGCG 4 cut(s) 142, 417, 419, 439
BspLI GGNNCC 5 cut(s) 83, 105, 209, 245, 336
BspT107I GGYRCC 3 cut(s) 81, 243, 334
BsrFI RCCGGY 3 cut(s) 116, 176, 331
BssAI RCCGGY 3 cut(s) 116, 176, 331
BssECI CCNNGG 4 cut(s) 167, 259, 338, 448
BssMI GATC 1 cut(s) 282
BssNAI GTATAC 1 cut(s) 22
BssNI GRCGYC 2 cut(s) 318, 380
BssSI CACGAG 1 cut(s) 93
Bst1107I GTATAC 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 351
BstACI GRCGYC 2 cut(s) 318, 380
BstC8I GCNNGC 1 cut(s) 345
BstFNI CGCG 4 cut(s) 142, 417, 419, 439
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 2 cut(s) 176, 419
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 166, 337
BstUI CGCG 4 cut(s) 142, 417, 419, 439
BstV1I GCAGC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZ17I GTATAC 1 cut(s) 22
BsuRI GGCC 2 cut(s) 106, 310
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 2 cut(s) 176, 419
Cfr10I RCCGGY 3 cut(s) 116, 176, 331
Cfr13I GGNCC 3 cut(s) 104, 207, 308
CseI GACGC 2 cut(s) 307, 388
Csp6I GTAC 4 cut(s) 50, 82, 160, 352
CspAI ACCGGT 1 cut(s) 331
CviAII CATG 1 cut(s) 240
CviQI GTAC 4 cut(s) 50, 82, 160, 352
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eco24I GRGCYC 2 cut(s) 94, 345
Eco47I GGWCC 1 cut(s) 207
Eco88I CYCGRG 2 cut(s) 100, 214
EcoT38I GRGCYC 2 cut(s) 94, 345
FaeI CATG 1 cut(s) 243
FaiI YATR 3 cut(s) 22, 241, 249
FaqI GGGAC 1 cut(s) 193
FatI CATG 1 cut(s) 239
FauI CCCGC 3 cut(s) 71, 135, 432
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 373
FriOI GRGCYC 2 cut(s) 94, 345
Fsp4HI GCNGC 1 cut(s) 373
FspBI CTAG 1 cut(s) 457
GlaI GCGC 2 cut(s) 175, 418
GluI GCNGC 1 cut(s) 373
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 2 cut(s) 106, 310
HapII CCGG 6 cut(s) 117, 167, 177, 332, 338, 376
HgaI GACGC 2 cut(s) 307, 388
HhaI GCGC 2 cut(s) 176, 419
Hin1I GRCGYC 2 cut(s) 318, 380
Hin1II CATG 1 cut(s) 243
Hin6I GCGC 2 cut(s) 174, 417
HinP1I GCGC 2 cut(s) 174, 417
HinfI GANTC 3 cut(s) 188, 217, 264
HpaII CCGG 6 cut(s) 117, 167, 177, 332, 338, 376
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 47, 263, 410
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 2 cut(s) 64, 293
HpyAV CCTTC 3 cut(s) 65, 147, 223
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92I GRCGYC 2 cut(s) 318, 380
Hsp92II CATG 1 cut(s) 243
HspAI GCGC 2 cut(s) 174, 417
KpnI GGTACC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 4 cut(s) 145, 171, 236, 369
LpnPI CCDG 6 cut(s) 130, 180, 190, 345, 351, 389
Lsp1109I GCAGC 1 cut(s) 384
MaeI CTAG 1 cut(s) 457
MaeIII GTNAC 2 cut(s) 391, 452
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 1 cut(s) 277
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 94, 345
MlyI GAGTC 2 cut(s) 226, 273
MmeI TCCRAC 2 cut(s) 25, 347
MspI CCGG 6 cut(s) 117, 167, 177, 332, 338, 376
MspR9I CCNGG 2 cut(s) 168, 339
MvnI CGCG 4 cut(s) 142, 417, 419, 439
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 2 cut(s) 168, 339
NdeII GATC 1 cut(s) 282
NlaIII CATG 1 cut(s) 243
NlaIV GGNNCC 5 cut(s) 83, 105, 209, 245, 336
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 2 cut(s) 391, 452
PfeI GAWTC 1 cut(s) 188
PinAI ACCGGT 1 cut(s) 331
PkrI GCNGC 1 cut(s) 374
PleI GAGTC 2 cut(s) 225, 272
PpsI GAGTC 2 cut(s) 225, 272
PspN4I GGNNCC 5 cut(s) 83, 105, 209, 245, 336
PspPI GGNCC 3 cut(s) 104, 207, 308
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 4 cut(s) 51, 83, 161, 353
RsaNI GTAC 4 cut(s) 50, 82, 160, 352
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 3 cut(s) 104, 207, 308
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 2 cut(s) 226, 273
ScrFI CCNGG 2 cut(s) 168, 339
SduI GDGCHC 2 cut(s) 94, 345
SetI ASST 6 cut(s) 32, 55, 132, 139, 425, 454
SinI GGWCC 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SsiI CCGC 5 cut(s) 8, 78, 142, 205, 439
SspMI CTAG 1 cut(s) 457
StyD4I CCNGG 2 cut(s) 166, 337
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 123, 291
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 188
TseFI GTSAC 2 cut(s) 391, 452
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 2 cut(s) 391, 452
TspDTI ATGAA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 1 cut(s) 457
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.