Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006888.1

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Forward (+)

257819 .. 258238

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006888.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgcatgcctatcacctttacgagggggcttcttctgttgtgcttgtgtatagcagcggtgacgatgagaacagcagaagcagcatgtggaggaggatacataaggacccgaaacagcccttgaatacaagaatcaatgacctactgagccggatgactttggaggaaaagattggccagatgacacagatagagcgcagtgttgcttcagctgaggtcatgaacaagtactacattgggagtgtcttgagcggcggtgggagtgtgccatcagaagaagcttctggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

5.86

Isoelectric Point (pI)

68.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	252
AciI	CCGC	3 cut(s)	57, 252, 255
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	2 cut(s)	212, 281
AluI	AGCT	2 cut(s)	212, 281
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	54, 81
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	5, 71
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	66, 93
BccI	CCATC	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	3 cut(s)	55, 82, 253
BlsI	GCNGC	3 cut(s)	56, 83, 254
BmcAI	AGTACT	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	137, 204
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	66, 93
BshFI	GGCC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	177
BspACI	CCGC	3 cut(s)	57, 252, 255
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	138, 205
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	146, 213
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNSI	RCATGY	2 cut(s)	8, 88
BstV1I	GCAGC	2 cut(s)	66, 93
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	5, 85, 220
CviJI	RGCY	6 cut(s)	29, 118, 150, 177, 212, 281
CviKI_1	RGCY	6 cut(s)	29, 118, 150, 177, 212, 281
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	146, 213
EaeI	YGGCCR	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 88, 223
FaiI	YATR	5 cut(s)	6, 51, 86, 102, 221
FatI	CATG	3 cut(s)	4, 84, 219
Fnu4HI	GCNGC	3 cut(s)	55, 82, 253
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	3 cut(s)	55, 82, 253
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	3 cut(s)	55, 82, 253
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	8, 88, 223
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	2 cut(s)	5, 71
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	3 cut(s)	220, 247, 285
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	2 cut(s)	146, 213
Hsp92II	CATG	3 cut(s)	8, 88, 223
HspAI	GCGC	1 cut(s)	196
LpnPI	CCDG	3 cut(s)	164, 191, 270
Lsp1109I	GCAGC	2 cut(s)	66, 93
MaeIII	GTNAC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	252
MboII	GAAGA	2 cut(s)	24, 287
MlsI	TGGCCA	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	177
MnlI	CCTC	5 cut(s)	16, 84, 87, 157, 208
Mox20I	TGGCCA	1 cut(s)	177
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	2 cut(s)	57, 212
MspI	CCGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	81
NlaIII	CATG	3 cut(s)	8, 88, 223
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 88
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	56, 83, 254
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PsrI	GAACNNNNNNTAC	2 cut(s)	215, 247
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SatI	GCNGC	3 cut(s)	55, 82, 253
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	230
SetI	ASST	5 cut(s)	18, 144, 214, 219, 283
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SphI	GCATGC	1 cut(s)	8
SsiI	CCGC	3 cut(s)	57, 252, 255
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	132
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	54, 81
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	20
XceI	RCATGY	2 cut(s)	8, 88
ZrmI	AGTACT	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.