Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001307.1

Orthogroup ID

OG0000625

Physical Location & Seq

Genomic Coordinates Reverse (-)

118640 .. 119443

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001307.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgaagcggatgaccctggccgagaagattggccaaatggtccagatcgagcgagaggttgctacccctgatgtcatgaccaagtatttcataggaagtgtgcttagtggtggtggcagtgtgccggctccaaaagcatcagctgaaacatgggtcaatcttgtcaatggaatccaaaagggatctctatccacccgtctcgggattcctatgatttatgggatcgacgctgtccacggccacaacaacgtctatagtgctaccgttttccctcataatgttggattgggagccaccagagatcctgcgcttgtcaagagaatcggagaggcgactgcccttgaagtcagggcaacaggaattccttatgtctttgccccatgtattgcggtttgcagggatccaagatggggtaggtgctacgaaagctacagtgaggaccataagattgtccaagcaatgactgagatcatacctggtttgcaaggagatatgcctcccagtttccaaaagggtgctccttatgttggtggaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

179

Amino Acids

19.25

Weight (kDa)

8.77

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47010 AT3G47040 AT3G47050
fragaria_vesca	FvH4_1g28352 FvH4_3g26960 FvH4_7g05180
malus_domestica	MD02G1089300.v1.1 MD02G1259900.v1.1 MD14G1004400.v1.1
prunus_persica	Prupe.2G065700_v2.0.a1 Prupe.2G092700_v2.0.a1 Prupe.7G007100_v2.0.a1 Prupe.7G007700_v2.0.a1
pyrus_communis	pycom02g22100 pycom07g04670 pycom11g06820 pycom11g15190 pycom14g00200 pycom14g00230
rosa_chinensis	RchiOBHm_Chr5g0049431 RchiOBHm_Chr5g0049441 RchiOBHm_Chr5g0079371 RchiOBHm_Chr6g0274311
rosa_laevigata	RLG00000006403 RLG00000008403 RLG00000028847 RLG00000034618
rosa_multiflora	Rmu_co8385859.1_g000001 Rmu_sc0000376.1_g000001 Rmu_sc0001307.1_g000017 Rmu_sc0001307.1_g000019 Rmu_sc0001900.1_g000031 Rmu_sc0002912.1_g000028 Rmu_sc0006084.1_g000018 Rmu_sc0006888.1_g000063 Rmu_sc0014052.1_g000002 Rmu_sc0014052.1_g000004 Rmu_sc0022931.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003570 Rroxscaffold_1G00032240 Rroxscaffold_1G00032250 Rroxscaffold_2G00103090 Rroxscaffold_4G00289090 Rroxscaffold_5G00336970
rosa_rugosa	Rorug03G0185900 Rorug04G0020500 Rorug04G0020600 Rorug04G0020600 Rorug04G0020700.1 Rorug04G0020800.1 Rorug04G0020900 Rorug04G0020900 Rorug04G0020900 Rorug05G0248500 Rorug05G0248500 Rorug05G0248500 Rorug05G0248600 Rorug05G0465800
rosa_samantha	Rh3CG363400 Rh4DG330500 Rh4DG330600 Rh5AG245600 Rh5AG516800 Rh5AG517600 Rh5AG519000 Rh5AG519500 Rh5BG335900 Rh5BG336000 Rh5BG540700 Rh5BG542700 Rh5DG348200 Rh5DG348300 Rh5DG551900 Rh6BG185500 Rh7DG265300
rosa_wichuraiana	Rw1G018240 Rw4G028270 Rw5G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	7, 389
AclWI	GGATC	5 cut(s)	190, 230, 296, 395, 408
AcoI	YGGCCR	3 cut(s)	18, 31, 238
AcsI	RAATTY	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	201, 410, 527
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	15, 475
AluBI	AGCT	2 cut(s)	143, 429
AluI	AGCT	2 cut(s)	143, 429
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	5 cut(s)	190, 230, 296, 395, 408
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	18, 31, 238
ApoI	RAATTY	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	40, 439
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	40, 439
BalI	TGGCCA	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	520
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	17, 477
BcoDI	GTCTC	1 cut(s)	203
BfmI	CTRYAG	2 cut(s)	253, 430
Bme1390I	CCNGG	2 cut(s)	17, 477
Bme18I	GGWCC	2 cut(s)	40, 439
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	40, 439
BmiI	GGNNCC	3 cut(s)	129, 292, 402
BmrFI	CCNGG	2 cut(s)	17, 477
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	15, 235
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 410, 527
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	17, 477
BseDI	CCNNGG	2 cut(s)	15, 235
BseGI	GGATG	1 cut(s)	15
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	3 cut(s)	201, 410, 527
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	20, 33, 240
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	201, 410, 527
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsnI	GGCC	3 cut(s)	20, 33, 240
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	6 cut(s)	45, 182, 222, 301, 400, 468
BspACI	CCGC	2 cut(s)	7, 389
BspANI	GGCC	3 cut(s)	20, 33, 240
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	129, 292, 402
BspPI	GGATC	5 cut(s)	190, 230, 296, 395, 408
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	501
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	15, 235
BssMI	GATC	6 cut(s)	45, 182, 222, 301, 400, 468
Bst2UI	CCWGG	2 cut(s)	17, 477
Bst4CI	ACNGT	2 cut(s)	265, 434
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	104, 465
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	6 cut(s)	48, 185, 225, 304, 403, 471
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	6 cut(s)	45, 182, 222, 301, 400, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 426
BstNI	CCWGG	2 cut(s)	17, 477
BstSCI	CCNGG	2 cut(s)	15, 475
BstSFI	CTRYAG	2 cut(s)	253, 430
BstX2I	RGATCY	3 cut(s)	182, 301, 400
BstYI	RGATCY	3 cut(s)	182, 301, 400
BsuRI	GGCC	3 cut(s)	20, 33, 240
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	124, 439
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	40, 439
CseI	GACGC	1 cut(s)	236
CsiI	ACCWGGT	1 cut(s)	475
CviAII	CATG	3 cut(s)	76, 150, 381
CviJI	RGCY	7 cut(s)	20, 33, 128, 143, 240, 293, 429
CviKI_1	RGCY	7 cut(s)	20, 33, 128, 143, 240, 293, 429
DdeI	CTNAG	2 cut(s)	104, 465
DpnI	GATC	6 cut(s)	47, 184, 224, 303, 402, 470
DpnII	GATC	6 cut(s)	45, 182, 222, 301, 400, 468
EaeI	YGGCCR	3 cut(s)	18, 31, 238
Eco47I	GGWCC	2 cut(s)	40, 439
Eco88I	CYCGRG	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	15, 475
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	3 cut(s)	79, 153, 384
FatI	CATG	3 cut(s)	75, 149, 380
FokI	GGATG	1 cut(s)	22
GlaI	GCGC	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	20, 33, 240
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	79, 153, 384
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	3 cut(s)	171, 205, 321
HpaII	CCGG	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	4 cut(s)	43, 76, 202, 316
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	265, 434
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	396, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 426
HpyF3I	CTNAG	2 cut(s)	104, 465
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	79, 153, 384
HspAI	GCGC	1 cut(s)	308
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	6 cut(s)	45, 182, 222, 301, 400, 468
LmnI	GCTCC	3 cut(s)	133, 290, 523
LweI	GCATC	1 cut(s)	146
MabI	ACCWGGT	1 cut(s)	475
MaeII	ACGT	1 cut(s)	249
MalI	GATC	6 cut(s)	47, 184, 224, 303, 402, 470
MboI	GATC	6 cut(s)	45, 182, 222, 301, 400, 468
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	3 cut(s)	182, 301, 400
MhlI	GDGCHC	1 cut(s)	520
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	1 cut(s)	360
MluNI	TGGCCA	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	5 cut(s)	49, 282, 322, 430, 507
Mox20I	TGGCCA	1 cut(s)	33
MroNI	GCCGGC	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	17, 477
MvaI	CCWGG	2 cut(s)	17, 477
MwoI	GCNNNNNNNGC	2 cut(s)	134, 426
NaeI	GCCGGC	1 cut(s)	126
NdeII	GATC	6 cut(s)	45, 182, 222, 301, 400, 468
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	79, 153, 384
NlaIV	GGNNCC	3 cut(s)	129, 292, 402
NmeAIII	GCCGAG	1 cut(s)	46
PagI	TCATGA	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	126
PfeI	GAWTC	3 cut(s)	171, 205, 321
PflFI	GACNNNGTC	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	15, 475
PspGI	CCWGG	2 cut(s)	15, 475
PspN4I	GGNNCC	3 cut(s)	129, 292, 402
PspPI	GGNCC	2 cut(s)	40, 439
PsuI	RGATCY	3 cut(s)	182, 301, 400
PsyI	GACNNNGTC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	143
Sau3AI	GATC	6 cut(s)	45, 182, 222, 301, 400, 468
Sau96I	GGNCC	2 cut(s)	40, 439
ScrFI	CCNGG	2 cut(s)	17, 477
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	6 cut(s)	60, 145, 252, 419, 431, 478
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	2 cut(s)	253, 430
SinI	GGWCC	2 cut(s)	40, 439
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	2 cut(s)	7, 389
StyD4I	CCNGG	2 cut(s)	15, 475
TaaI	ACNGT	2 cut(s)	265, 434
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	48, 225
TasI	AATT	1 cut(s)	360
TfiI	GAWTC	3 cut(s)	171, 205, 321
TscAI	CASTG	2 cut(s)	124, 439
TspDTI	ATGAA	2 cut(s)	17, 79
TspRI	CASTG	2 cut(s)	124, 439
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	40, 439
XapI	RAATTY	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.