Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

63288803 .. 63292186

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTGTTCAGAAGCACCAATATCAACAGGCGACGCAGGGTATTACATATATATAGAAGTGGTCTACTTGGTGATGATCATAGCATCGCCCAATCTAGAGGTTCATGAGCTGGATGAGCTCCCGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTAATGAGCTGCTGTCGCATAATTCCGGGGCTTTGTTTCGGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGACACCAAGAACTCTGGGAAGAGGACACTCGAAATAGCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

92

Amino Acids

10.62

Weight (kDa)

5.62

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	4 cut(s)	109, 118, 145, 166
AluI	AGCT	4 cut(s)	109, 118, 145, 166
Alw21I	GWGCWC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	122, 184
AsuHPI	GGTGA	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	2 cut(s)	122, 184
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	122, 184
BmrFI	CCNGG	2 cut(s)	122, 184
BmsI	GCATC	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	122, 184
BsaJI	CCNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	118, 228
BseXI	GCAGC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	122, 183, 273
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	118, 228
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 124, 151, 172
BstSCI	CCNGG	2 cut(s)	120, 182
BstV1I	GCAGC	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	118, 228
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	147
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	272
CseI	GACGC	1 cut(s)	41
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	8 cut(s)	109, 118, 145, 149, 154, 166, 188, 272
CviKI_1	RGCY	8 cut(s)	109, 118, 145, 149, 154, 166, 188, 272
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	1 cut(s)	107
FaiI	YATR	7 cut(s)	47, 49, 51, 53, 80, 105, 177
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	125, 235
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	167
HapII	CCGG	3 cut(s)	122, 183, 273
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	3 cut(s)	122, 183, 273
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	10, 198
Hpy188III	TCNNGA	2 cut(s)	95, 104
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 124, 151, 172
Hsp92II	CATG	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	123, 124
LpnPI	CCDG	8 cut(s)	12, 21, 95, 131, 135, 196, 224, 234
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	95
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	2 cut(s)	226, 265
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	1 cut(s)	178
MnlI	CCTC	5 cut(s)	91, 129, 219, 226, 249
MspI	CCGG	3 cut(s)	122, 183, 273
MspR9I	CCNGG	2 cut(s)	122, 184
MwoI	GCNNNNNNNGC	4 cut(s)	115, 124, 151, 172
NciI	CCSGG	2 cut(s)	122, 184
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	120
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	122, 184
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	6 cut(s)	102, 111, 120, 140, 147, 168
SfaNI	GCATC	1 cut(s)	92
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	120, 182
TaqI	TCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	134
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.