RchiOBHm_Chr3g0487561

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000677
Physical Location & Seq
Reverse (-)
34765744 .. 34766162
419 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45199

Sequence Viewer

Length: 159 bp
ATGATAGAGTATTGCAGAGGAAAGCTGCCGAATTTCATGGTGCCGAAGACGGTGGTGTTTATTGAGGAGCTGCCGAAGACGTCGACGGGGAAAATTCAGAAGTTCGTGCTGAGAGAGATGGCCAAGGCCTTGGGGTCCACAAGGCTGAGTCGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

52

Amino Acids

5.98

Weight (kDa)

10.13

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding_C PF13193 2 - 31 6.4e-07 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21530 AT1G21530 AT1G21540 AT1G77240
fragaria_vesca FvH4_1g27170 FvH4_1g27180
malus_domestica MD09G1283000.v1.1 MD09G1283100.v1.1 MD17G1272700.v1.1 MD17G1273900.v1.1
prunus_persica Prupe.3G011200_v2.0.a1 Prupe.3G011300_v2.0.a1
pyrus_communis pycom09g19090 pycom09g19100 pycom17g27150 pycom17g27180 pycom17g27190
rosa_chinensis RchiOBHm_Chr3g0487461 RchiOBHm_Chr3g0487511 RchiOBHm_Chr3g0487561 RchiOBHm_Chr3g0487571 RchiOBHm_Chr3g0487741 RchiOBHm_Chr4g0432931
rosa_laevigata RLG00000013740 RLG00000022982 RLG00000023000 RLG00000023001 RLG00000023003
rosa_multiflora Rmu_co8229999.1_g000001 Rmu_sc0001491.1_g000005 Rmu_sc0005285.1_g000013 Rmu_sc0005285.1_g000017 Rmu_sc0005285.1_g000018 Rmu_sc0007025.1_g000002 Rmu_sc0008132.1_g000007 Rmu_sc0008132.1_g000012 Rmu_sc0009101.1_g000001 Rmu_sc0009101.1_g000002 Rmu_sc0010073.1_g000016 Rmu_sc0011808.1_g000002 Rmu_sc0011808.1_g000006 Rmu_sc0032698.1_g000001 Rmu_ssc0000018.1_g000065
rosa_roxburghii Rroxscaffold_6G00394540 Rroxscaffold_6G00394550 Rroxscaffold_6G00394740 Rroxscaffold_6G00394780
rosa_rugosa Rorug03G0234100 Rorug03G0234100 Rorug03G0236100
rosa_samantha Rh3AG282200 Rh3AG282500 Rh3AG282800 Rh3AG284200 Rh3BG317800 Rh3BG318300 Rh3BG320600 Rh3CG316300 Rh3CG316500 Rh3CG316700 Rh3CG319100 Rh3CG319200 Rh3CG319300 Rh3DG313900 Rh3DG314000 Rh3DG314300 Rh3DG314400 Rh3DG317800
rosa_wichuraiana Rw0G009700 Rw3G024990 Rw3G025000 Rw3G025010 Rw3G025020 Rw3G025200 Rw3G025210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 31, 93
AcyI GRCGYC 1 cut(s) 80
AluBI AGCT 2 cut(s) 25, 70
AluI AGCT 2 cut(s) 25, 70
AoxI GGCC 2 cut(s) 120, 126
ApeKI GCWGC 2 cut(s) 25, 70
ApoI RAATTY 2 cut(s) 31, 93
AspS9I GGNCC 1 cut(s) 135
AvaII GGWCC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 122
BanI GGYRCC 1 cut(s) 40
BbsI GAAGAC 2 cut(s) 53, 83
BbvI GCAGC 2 cut(s) 12, 57
BccI CCATC 1 cut(s) 112
BisI GCNGC 2 cut(s) 26, 71
BlsI GCNGC 2 cut(s) 27, 72
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 42, 136
BpiI GAAGAC 2 cut(s) 53, 83
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 123, 129
BseDI CCNNGG 2 cut(s) 123, 129
BseGI GGATG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 101, 137
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 12, 57
BshFI GGCC 2 cut(s) 122, 128
BshNI GGYRCC 1 cut(s) 40
BsnI GGCC 2 cut(s) 122, 128
BspANI GGCC 2 cut(s) 122, 128
BspCNI CTCAG 2 cut(s) 102, 138
BspLI GGNNCC 2 cut(s) 42, 136
BspT107I GGYRCC 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 123, 129
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 2 cut(s) 123, 129
Bst4CI ACNGT 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 110, 146
BstF5I GGATG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 12, 57
BstV2I GAAGAC 2 cut(s) 53, 83
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 122, 128
BtsCI GGATG 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 1 cut(s) 37
CviJI RGCY 5 cut(s) 25, 70, 122, 128, 145
CviKI_1 RGCY 5 cut(s) 25, 70, 122, 128, 145
DdeI CTNAG 2 cut(s) 110, 146
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 123, 129
Eco147I AGGCCT 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 123, 129
ErhI CCWWGG 2 cut(s) 123, 129
FaeI CATG 1 cut(s) 40
FaiI YATR 1 cut(s) 38
FatI CATG 1 cut(s) 36
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 26, 71
Fsp4HI GCNGC 2 cut(s) 26, 71
GluI GCNGC 2 cut(s) 26, 71
HaeIII GGCC 2 cut(s) 122, 128
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 84, 138
Hpy188I TCNGA 2 cut(s) 99, 153
Hpy8I GTNNAC 2 cut(s) 84, 138
Hpy99I CGWCG 2 cut(s) 85, 88
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 110, 146
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 40
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 2 cut(s) 12, 57
MaeII ACGT 1 cut(s) 80
MboII GAAGA 2 cut(s) 58, 88
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 2 cut(s) 31, 93
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 2 cut(s) 11, 58
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 42, 136
PceI AGGCCT 1 cut(s) 128
PkrI GCNGC 2 cut(s) 27, 72
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 42, 136
PspPI GGNCC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 82
SatI GCNGC 2 cut(s) 26, 71
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 157
SetI ASST 3 cut(s) 27, 72, 83
SgeI CNNG 6 cut(s) 49, 99, 118, 136, 142, 153
SgrDI CGTCGACG 1 cut(s) 82
SinI GGWCC 1 cut(s) 135
Sse9I AATT 2 cut(s) 31, 93
SseBI AGGCCT 1 cut(s) 128
StuI AGGCCT 1 cut(s) 128
StyI CCWWGG 2 cut(s) 123, 129
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 31, 93
TseI GCWGC 2 cut(s) 25, 70
TspDTI ATGAA 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 2 cut(s) 31, 93
XmiI GTMKAC 1 cut(s) 83
ZraI GACGTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.