Rroxscaffold_6G00394550

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000677
Physical Location & Seq
Forward (+)
15302838 .. 15327352
24515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394550.1

Sequence Viewer

Length: 369 bp
ATGGTGCCGAAGACAGTGGTGTTTAAGGAGGAGCTACCGAAGACATCGACGGGGAAGATTCAGAAGTTCGTGCTGAGAGAGATGGCGGCCCAGTGTTACTTGATTCGCAGTTCGTTGAGGAACGGATACGCGGTACCGGTACGCAGTATGCCAGCCTCTATGATACGCAGTATGACAGTCTCTATGATACACATATTATTTAGGCGACCACGCATACGAGTTTCTTCGTTGAGCAATAACTCGGGAAAGGCTAAGAAGGTGGAGATCGAGGAGAAGAAGGTGAAGATCCGTAAAAGAGAGATTCTAATCGGGAATGAGCGGAGCTACACTCGTGCCTTTGTTCGGCGATCTAGGGTACGAAATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

122

Amino Acids

14.22

Weight (kDa)

11.63

Isoelectric Point (pI)

74.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21530 AT1G21530 AT1G21540 AT1G77240
fragaria_vesca FvH4_1g27170 FvH4_1g27180
malus_domestica MD09G1283000.v1.1 MD09G1283100.v1.1 MD17G1272700.v1.1 MD17G1273900.v1.1
prunus_persica Prupe.3G011200_v2.0.a1 Prupe.3G011300_v2.0.a1
pyrus_communis pycom09g19090 pycom09g19100 pycom17g27150 pycom17g27180 pycom17g27190
rosa_chinensis RchiOBHm_Chr3g0487461 RchiOBHm_Chr3g0487511 RchiOBHm_Chr3g0487561 RchiOBHm_Chr3g0487571 RchiOBHm_Chr3g0487741 RchiOBHm_Chr4g0432931
rosa_laevigata RLG00000013740 RLG00000022982 RLG00000023000 RLG00000023001 RLG00000023003
rosa_multiflora Rmu_co8229999.1_g000001 Rmu_sc0001491.1_g000005 Rmu_sc0005285.1_g000013 Rmu_sc0005285.1_g000017 Rmu_sc0005285.1_g000018 Rmu_sc0007025.1_g000002 Rmu_sc0008132.1_g000007 Rmu_sc0008132.1_g000012 Rmu_sc0009101.1_g000001 Rmu_sc0009101.1_g000002 Rmu_sc0010073.1_g000016 Rmu_sc0011808.1_g000002 Rmu_sc0011808.1_g000006 Rmu_sc0032698.1_g000001 Rmu_ssc0000018.1_g000065
rosa_roxburghii Rroxscaffold_6G00394540 Rroxscaffold_6G00394550 Rroxscaffold_6G00394740 Rroxscaffold_6G00394780
rosa_rugosa Rorug03G0234100 Rorug03G0234100 Rorug03G0236100
rosa_samantha Rh3AG282200 Rh3AG282500 Rh3AG282800 Rh3AG284200 Rh3BG317800 Rh3BG318300 Rh3BG320600 Rh3CG316300 Rh3CG316500 Rh3CG316700 Rh3CG319100 Rh3CG319200 Rh3CG319300 Rh3DG313900 Rh3DG314000 Rh3DG314300 Rh3DG314400 Rh3DG317800
rosa_wichuraiana Rw0G009700 Rw3G024990 Rw3G025000 Rw3G025010 Rw3G025020 Rw3G025200 Rw3G025210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 133
AccB1I GGYRCC 2 cut(s) 4, 133
AccBSI CCGCTC 1 cut(s) 319
AccII CGCG 1 cut(s) 131
AciI CCGC 3 cut(s) 86, 131, 319
AclWI GGATC 1 cut(s) 280
AfaI GTAC 3 cut(s) 135, 141, 357
AfiI CCNNNNNNNGG 1 cut(s) 342
AgeI ACCGGT 1 cut(s) 136
AluBI AGCT 2 cut(s) 34, 324
AluI AGCT 2 cut(s) 34, 324
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 1 cut(s) 87
AsiGI ACCGGT 1 cut(s) 136
Asp718I GGTACC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 241
BanI GGYRCC 2 cut(s) 4, 133
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 2 cut(s) 17, 47
BccI CCATC 1 cut(s) 76
BciVI GTATCC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 351
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 6, 135
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 17, 47
BplI GAGNNNNNCTC 2 cut(s) 313, 345
BsaBI GATNNNNATC 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 305
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 44, 284
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 2 cut(s) 4, 133
BshTI ACCGGT 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 241
Bsp143I GATC 3 cut(s) 264, 285, 347
BspACI CCGC 3 cut(s) 86, 131, 319
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 6, 135
BspPI GGATC 1 cut(s) 280
BspT107I GGYRCC 2 cut(s) 4, 133
BsrBI CCGCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 136
BsrI ACTGG 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 136
BssMI GATC 3 cut(s) 264, 285, 347
BssSI CACGAG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 16, 178
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 74, 252
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 3 cut(s) 267, 288, 350
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 3 cut(s) 264, 285, 347
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 2 cut(s) 17, 47
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 21, 98
Cac8I GCNNGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 3 cut(s) 134, 140, 356
CspAI ACCGGT 1 cut(s) 136
CviJI RGCY 5 cut(s) 34, 89, 155, 251, 324
CviKI_1 RGCY 5 cut(s) 34, 89, 155, 251, 324
CviQI GTAC 3 cut(s) 134, 140, 356
DdeI CTNAG 2 cut(s) 74, 252
DpnI GATC 3 cut(s) 266, 287, 349
DpnII GATC 3 cut(s) 264, 285, 347
Eco88I CYCGRG 1 cut(s) 241
FaiI YATR 6 cut(s) 149, 161, 173, 185, 194, 215
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 351
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 137
HinfI GANTC 3 cut(s) 58, 103, 301
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 243, 310
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 250, 271
HpyCH4III ACNGT 2 cut(s) 16, 178
HpyF3I CTNAG 2 cut(s) 74, 252
KpnI GGTACC 1 cut(s) 137
Kzo9I GATC 3 cut(s) 264, 285, 347
LmnI GCTCC 2 cut(s) 31, 321
LpnPI CCDG 3 cut(s) 104, 150, 165
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 266, 287, 349
MbiI CCGCTC 1 cut(s) 319
MboI GATC 3 cut(s) 264, 285, 347
MboII GAAGA 6 cut(s) 22, 52, 67, 216, 286, 295
MflI RGATCY 1 cut(s) 285
MnlI CCTC 4 cut(s) 22, 111, 166, 262
MseI TTAA 1 cut(s) 24
MspI CCGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 131
NdeII GATC 3 cut(s) 264, 285, 347
NlaIV GGNNCC 2 cut(s) 6, 135
PfeI GAWTC 3 cut(s) 58, 103, 301
PinAI ACCGGT 1 cut(s) 136
PkrI GCNGC 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 6, 135
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 3 cut(s) 135, 141, 357
RsaNI GTAC 3 cut(s) 134, 140, 356
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 3 cut(s) 264, 285, 347
Sau96I GGNCC 1 cut(s) 88
SetI ASST 4 cut(s) 36, 261, 282, 326
SsiI CCGC 3 cut(s) 86, 131, 319
SspMI CTAG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 16, 178
TaqI TCGA 2 cut(s) 47, 267
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 3 cut(s) 58, 103, 301
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 2 cut(s) 21, 98
TspGWI ACGGA 2 cut(s) 138, 278
TspRI CASTG 2 cut(s) 21, 98
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.