Rmu_sc0010073.1_g000016

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010073.1
OG0000677
Physical Location & Seq
Reverse (-)
85361 .. 85771
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010073.1_g000016.1.cds

Sequence Viewer

Length: 411 bp
atgtacgaggaaatggtggagagcggcgacccggacttccagtgggccctgccggagaacgagtgggacccgatgacgctgaaatacacttctagtacgacttcctcgcccaagggagtggtccactgccacagagggcttcatcatcaccgtcaactctctcctcgactgggccgtacccagacagcccgtctatctctggacgcttcggatgttccacgccaacggctggagctacccatacgggatcccacgcttccgtttgtgagcctgaaagatgacgtggggcggaggccgacggagaaggagatgatagagtactgcagaggaaagctgccgaatttcatggtgccgaagacggtggtgtttattgaggagctgccgaagactttgaaatttgtatgggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

136

Amino Acids

15.82

Weight (kDa)

6.52

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21530 AT1G21530 AT1G21540 AT1G77240
fragaria_vesca FvH4_1g27170 FvH4_1g27180
malus_domestica MD09G1283000.v1.1 MD09G1283100.v1.1 MD17G1272700.v1.1 MD17G1273900.v1.1
prunus_persica Prupe.3G011200_v2.0.a1 Prupe.3G011300_v2.0.a1
pyrus_communis pycom09g19090 pycom09g19100 pycom17g27150 pycom17g27180 pycom17g27190
rosa_chinensis RchiOBHm_Chr3g0487461 RchiOBHm_Chr3g0487511 RchiOBHm_Chr3g0487561 RchiOBHm_Chr3g0487571 RchiOBHm_Chr3g0487741 RchiOBHm_Chr4g0432931
rosa_laevigata RLG00000013740 RLG00000022982 RLG00000023000 RLG00000023001 RLG00000023003
rosa_multiflora Rmu_co8229999.1_g000001 Rmu_sc0001491.1_g000005 Rmu_sc0005285.1_g000013 Rmu_sc0005285.1_g000017 Rmu_sc0005285.1_g000018 Rmu_sc0007025.1_g000002 Rmu_sc0008132.1_g000007 Rmu_sc0008132.1_g000012 Rmu_sc0009101.1_g000001 Rmu_sc0009101.1_g000002 Rmu_sc0010073.1_g000016 Rmu_sc0011808.1_g000002 Rmu_sc0011808.1_g000006 Rmu_sc0032698.1_g000001 Rmu_ssc0000018.1_g000065
rosa_roxburghii Rroxscaffold_6G00394540 Rroxscaffold_6G00394550 Rroxscaffold_6G00394740 Rroxscaffold_6G00394780
rosa_rugosa Rorug03G0234100 Rorug03G0234100 Rorug03G0236100
rosa_samantha Rh3AG282200 Rh3AG282500 Rh3AG282800 Rh3AG284200 Rh3BG317800 Rh3BG318300 Rh3BG320600 Rh3CG316300 Rh3CG316500 Rh3CG316700 Rh3CG319100 Rh3CG319200 Rh3CG319300 Rh3DG313900 Rh3DG314000 Rh3DG314300 Rh3DG314400 Rh3DG317800
rosa_wichuraiana Rw0G009700 Rw3G024990 Rw3G025000 Rw3G025010 Rw3G025020 Rw3G025200 Rw3G025210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AccB7I CCANNNNNTGG 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 24
AciI CCGC 2 cut(s) 24, 289
AclWI GGATC 2 cut(s) 242, 255
AcsI RAATTY 2 cut(s) 340, 395
AfaI GTAC 4 cut(s) 5, 97, 178, 320
AfiI CCNNNNNNNGG 2 cut(s) 170, 229
AgsI TTSAA 1 cut(s) 394
AhdI GACNNNNNGTC 1 cut(s) 189
AjiI CACGTC 1 cut(s) 283
AluBI AGCT 3 cut(s) 235, 334, 379
AluI AGCT 3 cut(s) 235, 334, 379
AlwI GGATC 2 cut(s) 242, 255
AoxI GGCC 3 cut(s) 45, 172, 293
ApaI GGGCCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 334, 379
ApoI RAATTY 2 cut(s) 340, 395
AspS9I GGNCC 5 cut(s) 45, 46, 67, 121, 172
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 67, 121
BaeGI GKGCMC 1 cut(s) 49
BamHI GGATCC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 49
BbsI GAAGAC 2 cut(s) 362, 392
BbvI GCAGC 2 cut(s) 321, 366
BceAI ACGGC 2 cut(s) 159, 242
BcnI CCSGG 1 cut(s) 32
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 3 cut(s) 25, 335, 380
BlsI GCNGC 3 cut(s) 26, 336, 381
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 2 cut(s) 67, 121
BmeRI GACNNNNNGTC 1 cut(s) 189
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 5 cut(s) 45, 46, 67, 121, 172
BmiI GGNNCC 5 cut(s) 47, 68, 69, 249, 351
BmrFI CCNGG 1 cut(s) 32
BmrI ACTGGG 1 cut(s) 179
BmuI ACTGGG 1 cut(s) 179
BpiI GAAGAC 2 cut(s) 362, 392
BpmI CTGGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 229
Bse1I ACTGG 2 cut(s) 40, 174
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 170, 229
BseNI ACTGG 2 cut(s) 40, 174
BseRI GAGGAG 2 cut(s) 153, 389
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 2 cut(s) 321, 366
BshFI GGCC 3 cut(s) 47, 174, 295
BshNI GGYRCC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 32, 53
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 170, 229
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 3 cut(s) 47, 174, 295
Bsp120I GGGCCC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 2 cut(s) 24, 289
BspANI GGCC 3 cut(s) 47, 174, 295
BspLI GGNNCC 5 cut(s) 47, 68, 69, 249, 351
BspMAI CTGCAG 1 cut(s) 326
BspPI GGATC 2 cut(s) 242, 255
BspT107I GGYRCC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 24
BsrI ACTGG 2 cut(s) 40, 174
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 152, 361
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 321, 366
BstV2I GAAGAC 2 cut(s) 362, 392
BstX2I RGATCY 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 3 cut(s) 47, 174, 295
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 47, 124
Cfr13I GGNCC 5 cut(s) 45, 46, 67, 121, 172
CseI GACGC 2 cut(s) 85, 212
Csp6I GTAC 4 cut(s) 4, 96, 177, 319
CviAII CATG 1 cut(s) 346
CviQI GTAC 4 cut(s) 4, 96, 177, 319
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
DriI GACNNNNNGTC 1 cut(s) 189
Eam1105I GACNNNNNGTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 67, 121
EcoO109I RGGNCCY 2 cut(s) 46, 67
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 349
FaiI YATR 3 cut(s) 242, 347, 403
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 25, 335, 380
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 25, 335, 380
FspBI CTAG 1 cut(s) 93
GluI GCNGC 3 cut(s) 25, 335, 380
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 3 cut(s) 47, 174, 295
HapII CCGG 2 cut(s) 32, 53
HgaI GACGC 2 cut(s) 85, 212
Hin1II CATG 1 cut(s) 349
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HpaII CCGG 2 cut(s) 32, 53
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 124, 155
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 124, 155
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 152, 361
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 1 cut(s) 349
KflI GGGWCCC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 2 cut(s) 232, 376
LpnPI CCDG 9 cut(s) 45, 53, 62, 66, 155, 185, 194, 215, 284
Lsp1109I GCAGC 2 cut(s) 321, 366
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 282
MalI GATC 1 cut(s) 249
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 367, 397
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 2 cut(s) 340, 395
MnlI CCTC 6 cut(s) 115, 128, 174, 285, 320, 367
MspI CCGG 2 cut(s) 32, 53
MspR9I CCNGG 1 cut(s) 32
NciI CCSGG 1 cut(s) 32
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 5 cut(s) 47, 68, 69, 249, 351
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 3 cut(s) 26, 336, 381
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
PspN4I GGNNCC 5 cut(s) 47, 68, 69, 249, 351
PspOMI GGGCCC 1 cut(s) 45
PspPI GGNCC 5 cut(s) 45, 46, 67, 121, 172
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 4 cut(s) 5, 97, 178, 320
RsaNI GTAC 4 cut(s) 4, 96, 177, 319
SatI GCNGC 3 cut(s) 25, 335, 380
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 5 cut(s) 45, 46, 67, 121, 172
ScaI AGTACT 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 49
SetI ASST 4 cut(s) 237, 285, 336, 381
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 2 cut(s) 67, 121
Sse9I AATT 2 cut(s) 340, 395
SsiI CCGC 2 cut(s) 24, 289
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 152, 361
TaiI ACGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 340, 395
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 27
TscAI CASTG 2 cut(s) 47, 131
TseI GCWGC 2 cut(s) 334, 379
TspDTI ATGAA 2 cut(s) 131, 334
TspGWI ACGGA 2 cut(s) 249, 314
TspRI CASTG 2 cut(s) 47, 131
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 67, 121
XapI RAATTY 2 cut(s) 340, 395
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.