Rmu_sc0005285.1_g000018

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005285.1
OG0000677
Physical Location & Seq
Forward (+)
74637 .. 75110
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005285.1_g000018.1.cds

Sequence Viewer

Length: 474 bp
atgttgggctacctcaaagacccggaaacgacgagcaaaaccctgaaacagaacgggtggttttacaccggcgacgtcggggttatgcacccggacgggtatctggagataaaggatcgatccaaggacgtgatcataagcgggggagagaacttgagcagcgtggaggtggagtcggttctctacaccaacgccgccgtgaacgaggcggccgtggtggctaagcctgacgagttctggggggagacgccgtgcgcgtttgtgagcctgaaagctgacgtcaggccgaggccgaccgagaaagagataatagagttctgtagaggaaagatgccgaatttcatggtgccgaagacggtggtgttcaaggacgagctgccgaagacgtcgacggggaagattcagaagtttatgctgagagagattgcgaaaaatattgggtctacatcaacgacgaggtccagtcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

157

Amino Acids

17.48

Weight (kDa)

7.7

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21530 AT1G21530 AT1G21540 AT1G77240
fragaria_vesca FvH4_1g27170 FvH4_1g27180
malus_domestica MD09G1283000.v1.1 MD09G1283100.v1.1 MD17G1272700.v1.1 MD17G1273900.v1.1
prunus_persica Prupe.3G011200_v2.0.a1 Prupe.3G011300_v2.0.a1
pyrus_communis pycom09g19090 pycom09g19100 pycom17g27150 pycom17g27180 pycom17g27190
rosa_chinensis RchiOBHm_Chr3g0487461 RchiOBHm_Chr3g0487511 RchiOBHm_Chr3g0487561 RchiOBHm_Chr3g0487571 RchiOBHm_Chr3g0487741 RchiOBHm_Chr4g0432931
rosa_laevigata RLG00000013740 RLG00000022982 RLG00000023000 RLG00000023001 RLG00000023003
rosa_multiflora Rmu_co8229999.1_g000001 Rmu_sc0001491.1_g000005 Rmu_sc0005285.1_g000013 Rmu_sc0005285.1_g000017 Rmu_sc0005285.1_g000018 Rmu_sc0007025.1_g000002 Rmu_sc0008132.1_g000007 Rmu_sc0008132.1_g000012 Rmu_sc0009101.1_g000001 Rmu_sc0009101.1_g000002 Rmu_sc0010073.1_g000016 Rmu_sc0011808.1_g000002 Rmu_sc0011808.1_g000006 Rmu_sc0032698.1_g000001 Rmu_ssc0000018.1_g000065
rosa_roxburghii Rroxscaffold_6G00394540 Rroxscaffold_6G00394550 Rroxscaffold_6G00394740 Rroxscaffold_6G00394780
rosa_rugosa Rorug03G0234100 Rorug03G0234100 Rorug03G0236100
rosa_samantha Rh3AG282200 Rh3AG282500 Rh3AG282800 Rh3AG284200 Rh3BG317800 Rh3BG318300 Rh3BG320600 Rh3CG316300 Rh3CG316500 Rh3CG316700 Rh3CG319100 Rh3CG319200 Rh3CG319300 Rh3DG313900 Rh3DG314000 Rh3DG314300 Rh3DG314400 Rh3DG317800
rosa_wichuraiana Rw0G009700 Rw3G024990 Rw3G025000 Rw3G025010 Rw3G025020 Rw3G025200 Rw3G025210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 78, 282, 389
AccB1I GGYRCC 1 cut(s) 346
AccI GTMKAC 2 cut(s) 389, 443
AccII CGCG 1 cut(s) 257
AciI CCGC 3 cut(s) 141, 195, 209
AclWI GGATC 2 cut(s) 114, 123
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 337
AcyI GRCGYC 4 cut(s) 75, 248, 279, 386
AgsI TTSAA 1 cut(s) 367
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 2 cut(s) 275, 376
AluI AGCT 2 cut(s) 275, 376
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 114, 123
AoxI GGCC 3 cut(s) 210, 284, 290
ApeKI GCWGC 2 cut(s) 159, 376
ApoI RAATTY 1 cut(s) 337
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 2 cut(s) 23, 92
AvaII GGWCC 1 cut(s) 459
BanI GGYRCC 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 359, 389
BbvI GCAGC 2 cut(s) 171, 363
BceAI ACGGC 3 cut(s) 182, 197, 235
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 2 cut(s) 23, 92
BcoDI GTCTC 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 319
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 4 cut(s) 160, 195, 210, 377
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 4 cut(s) 161, 196, 211, 378
Bme1390I CCNGG 2 cut(s) 23, 92
Bme18I GGWCC 1 cut(s) 459
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 23, 92
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 2 cut(s) 359, 389
BpmI CTGGAG 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 23, 92
Bsa29I ATCGAT 1 cut(s) 118
BsaHI GRCGYC 4 cut(s) 75, 248, 279, 386
BsaJI CCNNGG 3 cut(s) 123, 213, 287
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 236, 266
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 123, 213, 287
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 462
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 171, 363
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 2 cut(s) 213, 297
BshFI GGCC 3 cut(s) 212, 286, 292
BshNI GGYRCC 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 118
BsiEI CGRYCG 2 cut(s) 213, 297
BsiSI CCGG 3 cut(s) 23, 69, 92
BsmAI GTCTC 1 cut(s) 239
BsmBI CGTCTC 1 cut(s) 239
BsnI GGCC 3 cut(s) 212, 286, 292
Bsp143I GATC 3 cut(s) 115, 119, 132
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 3 cut(s) 141, 195, 209
BspANI GGCC 3 cut(s) 212, 286, 292
BspCNI CTCAG 1 cut(s) 408
BspDI ATCGAT 1 cut(s) 118
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 2 cut(s) 114, 123
BspT107I GGYRCC 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 462
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 123, 213, 287
BssMI GATC 3 cut(s) 115, 119, 132
BssNI GRCGYC 4 cut(s) 75, 248, 279, 386
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 358
BstACI GRCGYC 4 cut(s) 75, 248, 279, 386
BstDEI CTNAG 2 cut(s) 222, 416
BstDSI CCRYGG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 3 cut(s) 118, 122, 135
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 115, 119, 132
BstMCI CGRYCG 2 cut(s) 213, 297
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 21, 90
BstSFI CTRYAG 1 cut(s) 319
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 171, 363
BstV2I GAAGAC 2 cut(s) 359, 389
BstZI CGGCCG 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 118
BsuRI GGCC 3 cut(s) 212, 286, 292
BsuTUI ATCGAT 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 130
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 459
ClaI ATCGAT 1 cut(s) 118
CseI GACGC 1 cut(s) 256
CviAII CATG 1 cut(s) 343
CviJI RGCY 9 cut(s) 9, 212, 221, 226, 267, 275, 286, 292, 376
CviKI_1 RGCY 9 cut(s) 9, 212, 221, 226, 267, 275, 286, 292, 376
DdeI CTNAG 2 cut(s) 222, 416
DpnI GATC 3 cut(s) 117, 121, 134
DpnII GATC 3 cut(s) 115, 119, 132
EaeI YGGCCR 1 cut(s) 210
EagI CGGCCG 1 cut(s) 210
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 459
Eco52I CGGCCG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 1 cut(s) 346
FaiI YATR 4 cut(s) 86, 137, 344, 413
FatI CATG 1 cut(s) 342
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 1 cut(s) 132
FblI GTMKAC 2 cut(s) 389, 443
Fnu4HI GCNGC 4 cut(s) 160, 195, 210, 377
Fsp4HI GCNGC 4 cut(s) 160, 195, 210, 377
GlaI GCGC 1 cut(s) 256
GluI GCNGC 4 cut(s) 160, 195, 210, 377
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 3 cut(s) 212, 286, 292
HapII CCGG 3 cut(s) 23, 69, 92
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 4 cut(s) 75, 248, 279, 386
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 2 cut(s) 173, 400
HpaII CCGG 3 cut(s) 23, 69, 92
Hpy166II GTNNAC 3 cut(s) 202, 390, 444
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 3 cut(s) 202, 390, 444
Hpy99I CGWCG 6 cut(s) 34, 77, 80, 391, 394, 457
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 4 cut(s) 75, 129, 279, 386
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 222, 416
HpySE526I ACGT 4 cut(s) 75, 129, 279, 386
Hsp92I GRCGYC 4 cut(s) 75, 248, 279, 386
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 3 cut(s) 115, 119, 132
LpnPI CCDG 9 cut(s) 36, 56, 82, 89, 105, 223, 240, 268, 281
Lsp1109I GCAGC 2 cut(s) 171, 363
LweI GCATC 1 cut(s) 321
MaeII ACGT 4 cut(s) 75, 129, 279, 386
MalI GATC 3 cut(s) 117, 121, 134
MboI GATC 3 cut(s) 115, 119, 132
MboII GAAGA 3 cut(s) 364, 394, 409
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 6 cut(s) 23, 160, 199, 282, 317, 450
MspI CCGG 3 cut(s) 23, 69, 92
MspR9I CCNGG 2 cut(s) 23, 92
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 2 cut(s) 23, 92
NdeII GATC 3 cut(s) 115, 119, 132
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 312
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 254
PfeI GAWTC 1 cut(s) 400
PflFI GACNNNGTC 1 cut(s) 457
PkrI GCNGC 4 cut(s) 161, 196, 211, 378
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 459
PsyI GACNNNGTC 1 cut(s) 457
SalI GTCGAC 1 cut(s) 388
SatI GCNGC 4 cut(s) 160, 195, 210, 377
Sau3AI GATC 3 cut(s) 115, 119, 132
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 23, 92
SetI ASST 9 cut(s) 15, 78, 132, 171, 277, 282, 378, 389, 461
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 319
SgrAI CRCCGGYG 1 cut(s) 68
SgrDI CGTCGACG 1 cut(s) 388
SinI GGWCC 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 141, 195, 209
SspI AATATT 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 21, 90
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 4 cut(s) 78, 132, 282, 389
TaqI TCGA 2 cut(s) 118, 389
TaqII GACCGA 1 cut(s) 311
TasI AATT 1 cut(s) 337
TauI GCSGC 2 cut(s) 197, 212
TfiI GAWTC 1 cut(s) 400
TseI GCWGC 2 cut(s) 159, 376
TspDTI ATGAA 1 cut(s) 331
Tth111I GACNNNGTC 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 1 cut(s) 337
XmiI GTMKAC 2 cut(s) 389, 443
ZraI GACGTC 3 cut(s) 76, 280, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.