Rmu_sc0009101.1_g000002

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009101.1
OG0000677
Physical Location & Seq
Reverse (-)
4787 .. 5644
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009101.1_g000002.1.cds

Sequence Viewer

Length: 858 bp
atgtgcggtgcgccggtggtcctcaacatgctgaccaatgtaccgaacagcgagcctttgaggaacccggtccagatcatgaccgccggagctccgccacccgcggcggttctgtctcggactgagtcgctgggattcgtggtgagccacgggtacgggttaacggagacggcggggctggtggtgtcgtgcgcgtggaagcccgggtggaataagttgccggcgacggagagggcgaggctgaagtcgaggcagggggtgaggacggtggccatgacccgggtggacgtggtggatccggatacgggggtgccggttaaacgcgacggttcgtctcttggggaggtggttttcagaggcgggtgtgtgatgttgggttatctgaaagacccaaaaggcacggcgagttgcatgaaagacggttggttttacaccggcgacgtggcggtgatgcacccggacgggtatctggagatcaaagacagatccaaggacgtgatcataagcgggggagagaacttgagcagcgtggaggtggagtcggttctctacaccaactcggcggtgaacgaggtggccgtggtggcgaggcctgacgagttctggggggagacgccgtgcgcgtttgtgagcctgaaagatgacgtggggcggaggccgacggagaaggagatgatagagtactgcagaggaaagctgccgaatttcatggtgccgaagacggtggtgtttattgaggagctgccgaagacgtcgacggggaaaattcagaagttcgtgctgagagagatggcggcccggtgttacttgattcgcgggtcgttgcggaacgggtacgcagtacgcctgtctctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

285

Amino Acids

31.05

Weight (kDa)

8.62

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21530 AT1G21530 AT1G21540 AT1G77240
fragaria_vesca FvH4_1g27170 FvH4_1g27180
malus_domestica MD09G1283000.v1.1 MD09G1283100.v1.1 MD17G1272700.v1.1 MD17G1273900.v1.1
prunus_persica Prupe.3G011200_v2.0.a1 Prupe.3G011300_v2.0.a1
pyrus_communis pycom09g19090 pycom09g19100 pycom17g27150 pycom17g27180 pycom17g27190
rosa_chinensis RchiOBHm_Chr3g0487461 RchiOBHm_Chr3g0487511 RchiOBHm_Chr3g0487561 RchiOBHm_Chr3g0487571 RchiOBHm_Chr3g0487741 RchiOBHm_Chr4g0432931
rosa_laevigata RLG00000013740 RLG00000022982 RLG00000023000 RLG00000023001 RLG00000023003
rosa_multiflora Rmu_co8229999.1_g000001 Rmu_sc0001491.1_g000005 Rmu_sc0005285.1_g000013 Rmu_sc0005285.1_g000017 Rmu_sc0005285.1_g000018 Rmu_sc0007025.1_g000002 Rmu_sc0008132.1_g000007 Rmu_sc0008132.1_g000012 Rmu_sc0009101.1_g000001 Rmu_sc0009101.1_g000002 Rmu_sc0010073.1_g000016 Rmu_sc0011808.1_g000002 Rmu_sc0011808.1_g000006 Rmu_sc0032698.1_g000001 Rmu_ssc0000018.1_g000065
rosa_roxburghii Rroxscaffold_6G00394540 Rroxscaffold_6G00394550 Rroxscaffold_6G00394740 Rroxscaffold_6G00394780
rosa_rugosa Rorug03G0234100 Rorug03G0234100 Rorug03G0236100
rosa_samantha Rh3AG282200 Rh3AG282500 Rh3AG282800 Rh3AG284200 Rh3BG317800 Rh3BG318300 Rh3BG320600 Rh3CG316300 Rh3CG316500 Rh3CG316700 Rh3CG319100 Rh3CG319200 Rh3CG319300 Rh3DG313900 Rh3DG314000 Rh3DG314300 Rh3DG314400 Rh3DG317800
rosa_wichuraiana Rw0G009700 Rw3G024990 Rw3G025000 Rw3G025010 Rw3G025020 Rw3G025200 Rw3G025210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 755
AccB1I GGYRCC 2 cut(s) 310, 712
AccI GTMKAC 1 cut(s) 755
AccII CGCG 5 cut(s) 104, 194, 324, 623, 816
AccIII TCCGGA 1 cut(s) 298
AclWI GGATC 3 cut(s) 290, 303, 480
AcoI YGGCCR 2 cut(s) 270, 576
AcsI RAATTY 2 cut(s) 703, 765
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 2 cut(s) 614, 752
AfaI GTAC 5 cut(s) 42, 155, 683, 836, 843
AfiI CCNNNNNNNGG 2 cut(s) 279, 305
AhdI GACNNNNNGTC 1 cut(s) 331
AjiI CACGTC 4 cut(s) 289, 442, 496, 646
AluBI AGCT 3 cut(s) 92, 697, 742
AluI AGCT 3 cut(s) 92, 697, 742
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 4 cut(s) 120, 161, 339, 605
AlwI GGATC 3 cut(s) 290, 303, 480
Ama87I CYCGRG 2 cut(s) 203, 279
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 5 cut(s) 270, 576, 590, 656, 795
ApeKI GCWGC 3 cut(s) 525, 697, 742
ApoI RAATTY 2 cut(s) 703, 765
AspLEI GCGC 3 cut(s) 13, 194, 623
AspS9I GGNCC 3 cut(s) 19, 70, 796
AsuC2I CCSGG 7 cut(s) 68, 204, 205, 280, 281, 458, 799
AsuHPI GGTGA 4 cut(s) 154, 271, 460, 577
AvaI CYCGRG 2 cut(s) 203, 279
AvaII GGWCC 2 cut(s) 19, 70
BaeI ACNNNNGTAYC 4 cut(s) 24, 57, 294, 327
BalI TGGCCA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 2 cut(s) 310, 712
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 2 cut(s) 725, 755
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 3 cut(s) 537, 684, 729
BccI CCATC 1 cut(s) 784
BceAI ACGGC 4 cut(s) 186, 417, 563, 601
BciVI GTATCC 1 cut(s) 295
BclI TGATCA 1 cut(s) 498
BcnI CCSGG 7 cut(s) 68, 204, 205, 280, 281, 458, 799
BcoDI GTCTC 4 cut(s) 120, 161, 339, 605
BfmI CTRYAG 1 cut(s) 685
BfuI GTATCC 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 5 cut(s) 105, 526, 698, 743, 795
BlsI GCNGC 5 cut(s) 106, 527, 699, 744, 796
BmcAI AGTACT 1 cut(s) 683
Bme1390I CCNGG 7 cut(s) 68, 204, 205, 280, 281, 458, 799
Bme18I GGWCC 2 cut(s) 19, 70
BmeRI GACNNNNNGTC 1 cut(s) 331
BmeT110I CYCGRG 2 cut(s) 203, 279
BmgBI CACGTC 4 cut(s) 289, 442, 496, 646
BmgT120I GGNCC 3 cut(s) 19, 70, 796
BmiI GGNNCC 4 cut(s) 65, 297, 312, 714
BmrFI CCNGG 7 cut(s) 68, 204, 205, 280, 281, 458, 799
BmsI GCATC 1 cut(s) 441
BpiI GAAGAC 2 cut(s) 725, 755
BpmI CTGGAG 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 541
BpuMI CCSGG 7 cut(s) 68, 204, 205, 280, 281, 458, 799
BsaHI GRCGYC 2 cut(s) 614, 752
BsaJI CCNNGG 6 cut(s) 102, 148, 203, 279, 489, 579
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 4 cut(s) 524, 554, 602, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 305
Bse118I RCCGGY 4 cut(s) 13, 220, 313, 434
BseAI TCCGGA 1 cut(s) 298
BseDI CCNNGG 6 cut(s) 102, 148, 203, 279, 489, 579
BseLI CCNNNNNNNGG 2 cut(s) 279, 305
BseMII CTCAG 2 cut(s) 114, 773
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 3 cut(s) 537, 684, 729
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 5 cut(s) 104, 194, 324, 623, 816
BshFI GGCC 5 cut(s) 272, 578, 592, 658, 797
BshNI GGYRCC 2 cut(s) 310, 712
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 2 cut(s) 203, 279
BslI CCNNNNNNNGG 2 cut(s) 279, 305
BsmAI GTCTC 4 cut(s) 120, 161, 339, 605
BsmBI CGTCTC 3 cut(s) 161, 339, 605
BsnI GGCC 5 cut(s) 272, 578, 592, 658, 797
BsoBI CYCGRG 2 cut(s) 203, 279
Bsp1286I GDGCHC 1 cut(s) 94
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 5 cut(s) 75, 295, 474, 485, 498
BspANI GGCC 5 cut(s) 272, 578, 592, 658, 797
BspCNI CTCAG 2 cut(s) 115, 774
BspEI TCCGGA 1 cut(s) 298
BspFNI CGCG 5 cut(s) 104, 194, 324, 623, 816
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 4 cut(s) 65, 297, 312, 714
BspMAI CTGCAG 1 cut(s) 689
BspPI GGATC 3 cut(s) 290, 303, 480
BspT107I GGYRCC 2 cut(s) 310, 712
BsrFI RCCGGY 4 cut(s) 13, 220, 313, 434
BssAI RCCGGY 4 cut(s) 13, 220, 313, 434
BssECI CCNNGG 6 cut(s) 102, 148, 203, 279, 489, 579
BssMI GATC 5 cut(s) 75, 295, 474, 485, 498
BssNI GRCGYC 2 cut(s) 614, 752
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 4 cut(s) 268, 329, 422, 724
BstACI GRCGYC 2 cut(s) 614, 752
BstC8I GCNNGC 2 cut(s) 53, 222
BstDEI CTNAG 2 cut(s) 123, 782
BstDSI CCRYGG 3 cut(s) 102, 148, 579
BstFNI CGCG 5 cut(s) 104, 194, 324, 623, 816
BstHHI GCGC 3 cut(s) 13, 194, 623
BstKTI GATC 5 cut(s) 78, 298, 477, 488, 501
BstMAI GTCTC 4 cut(s) 120, 161, 339, 605
BstMBI GATC 5 cut(s) 75, 295, 474, 485, 498
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 7 cut(s) 66, 202, 203, 278, 279, 456, 797
BstSFI CTRYAG 1 cut(s) 685
BstUI CGCG 5 cut(s) 104, 194, 324, 623, 816
BstV1I GCAGC 3 cut(s) 537, 684, 729
BstV2I GAAGAC 2 cut(s) 725, 755
BstX2I RGATCY 2 cut(s) 295, 485
BstYI RGATCY 2 cut(s) 295, 485
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 5 cut(s) 272, 578, 592, 658, 797
BtgI CCRYGG 3 cut(s) 102, 148, 579
BtrI CACGTC 4 cut(s) 289, 442, 496, 646
Cac8I GCNNGC 2 cut(s) 53, 222
CciI TCATGA 1 cut(s) 78
CfoI GCGC 3 cut(s) 13, 194, 623
Cfr10I RCCGGY 4 cut(s) 13, 220, 313, 434
Cfr13I GGNCC 3 cut(s) 19, 70, 796
Cfr42I CCGCGG 1 cut(s) 105
Cfr9I CCCGGG 2 cut(s) 203, 279
CseI GACGC 1 cut(s) 622
Csp6I GTAC 5 cut(s) 41, 154, 682, 835, 842
CviAII CATG 5 cut(s) 28, 79, 274, 412, 709
CviQI GTAC 5 cut(s) 41, 154, 682, 835, 842
DdeI CTNAG 2 cut(s) 123, 782
DpnI GATC 5 cut(s) 77, 297, 476, 487, 500
DpnII GATC 5 cut(s) 75, 295, 474, 485, 498
DriI GACNNNNNGTC 1 cut(s) 331
EaeI YGGCCR 2 cut(s) 270, 576
Eam1105I GACNNNNNGTC 1 cut(s) 331
EciI GGCGGA 2 cut(s) 84, 667
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 2 cut(s) 19, 70
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 2 cut(s) 203, 279
EcoICRI GAGCTC 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 3 cut(s) 161, 339, 605
FaeI CATG 5 cut(s) 31, 82, 277, 415, 712
FaiI YATR 7 cut(s) 29, 80, 275, 413, 503, 710, 856
FatI CATG 5 cut(s) 27, 78, 273, 411, 708
FauI CCCGC 5 cut(s) 109, 166, 353, 500, 809
FbaI TGATCA 1 cut(s) 498
FblI GTMKAC 1 cut(s) 755
Fnu4HI GCNGC 5 cut(s) 105, 526, 698, 743, 795
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 5 cut(s) 105, 526, 698, 743, 795
GlaI GCGC 3 cut(s) 12, 193, 622
GluI GCNGC 5 cut(s) 105, 526, 698, 743, 795
GsaI CCCAGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 5 cut(s) 272, 578, 592, 658, 797
HgaI GACGC 1 cut(s) 622
HhaI GCGC 3 cut(s) 13, 194, 623
Hin1I GRCGYC 2 cut(s) 614, 752
Hin1II CATG 5 cut(s) 31, 82, 277, 415, 712
Hin6I GCGC 3 cut(s) 11, 192, 621
HinP1I GCGC 3 cut(s) 11, 192, 621
HincII GTYRAC 2 cut(s) 162, 756
HindII GTYRAC 2 cut(s) 162, 756
HinfI GANTC 4 cut(s) 125, 135, 539, 811
HpaI GTTAAC 1 cut(s) 162
HphI GGTGA 4 cut(s) 154, 271, 460, 577
Hpy166II GTNNAC 4 cut(s) 162, 286, 568, 756
Hpy188I TCNGA 4 cut(s) 120, 356, 384, 771
Hpy188III TCNNGA 4 cut(s) 73, 79, 299, 470
Hpy8I GTNNAC 4 cut(s) 162, 286, 568, 756
Hpy99I CGWCG 6 cut(s) 229, 329, 443, 664, 757, 760
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 4 cut(s) 268, 329, 422, 724
HpyCH4IV ACGT 5 cut(s) 288, 441, 495, 645, 752
HpyCH4V TGCA 3 cut(s) 411, 454, 687
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 2 cut(s) 123, 782
HpySE526I ACGT 5 cut(s) 288, 441, 495, 645, 752
Hsp92I GRCGYC 2 cut(s) 614, 752
Hsp92II CATG 5 cut(s) 31, 82, 277, 415, 712
HspAI GCGC 3 cut(s) 11, 192, 621
Kpn2I TCCGGA 1 cut(s) 298
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 498
KspAI GTTAAC 1 cut(s) 162
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 5 cut(s) 75, 295, 474, 485, 498
LmnI GCTCC 3 cut(s) 89, 97, 739
Lsp1109I GCAGC 3 cut(s) 537, 684, 729
LweI GCATC 1 cut(s) 441
MaeII ACGT 5 cut(s) 288, 441, 495, 645, 752
MaeIII GTNAC 1 cut(s) 803
MalI GATC 5 cut(s) 77, 297, 476, 487, 500
MboI GATC 5 cut(s) 75, 295, 474, 485, 498
MboII GAAGA 2 cut(s) 730, 760
MflI RGATCY 2 cut(s) 295, 485
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 2 cut(s) 703, 765
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 2 cut(s) 134, 548
Mox20I TGGCCA 1 cut(s) 272
MroI TCCGGA 1 cut(s) 298
MroNI GCCGGC 1 cut(s) 220
MscI TGGCCA 1 cut(s) 272
MseI TTAA 2 cut(s) 161, 318
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 7 cut(s) 68, 204, 205, 280, 281, 458, 799
MvnI CGCG 5 cut(s) 104, 194, 324, 623, 816
MwoI GCNNNNNNNGC 1 cut(s) 584
NaeI GCCGGC 1 cut(s) 222
NciI CCSGG 7 cut(s) 68, 204, 205, 280, 281, 458, 799
NdeII GATC 5 cut(s) 75, 295, 474, 485, 498
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 5 cut(s) 31, 82, 277, 415, 712
NlaIV GGNNCC 4 cut(s) 65, 297, 312, 714
NmeAIII GCCGAG 1 cut(s) 539
NspI RCATGY 1 cut(s) 31
PagI TCATGA 1 cut(s) 78
PceI AGGCCT 1 cut(s) 592
PcsI WCGNNNNNNNCGW 3 cut(s) 233, 576, 620
PdiI GCCGGC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 135, 811
PflFI GACNNNGTC 1 cut(s) 124
PkrI GCNGC 5 cut(s) 106, 527, 699, 744, 796
PleI GAGTC 2 cut(s) 133, 547
PpsI GAGTC 2 cut(s) 133, 547
Psp124BI GAGCTC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 130
PspN4I GGNNCC 4 cut(s) 65, 297, 312, 714
PspPI GGNCC 3 cut(s) 19, 70, 796
PstI CTGCAG 1 cut(s) 689
PsuI RGATCY 2 cut(s) 295, 485
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 5 cut(s) 42, 155, 683, 836, 843
RsaNI GTAC 5 cut(s) 41, 154, 682, 835, 842
SacI GAGCTC 1 cut(s) 94
SacII CCGCGG 1 cut(s) 105
SalI GTCGAC 1 cut(s) 754
SaqAI TTAA 2 cut(s) 161, 318
SatI GCNGC 5 cut(s) 105, 526, 698, 743, 795
Sau3AI GATC 5 cut(s) 75, 295, 474, 485, 498
Sau96I GGNCC 3 cut(s) 19, 70, 796
ScaI AGTACT 1 cut(s) 683
SchI GAGTC 2 cut(s) 134, 548
ScrFI CCNGG 7 cut(s) 68, 204, 205, 280, 281, 458, 799
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 1 cut(s) 441
SfcI CTRYAG 1 cut(s) 685
Sfr303I CCGCGG 1 cut(s) 105
SgrAI CRCCGGYG 2 cut(s) 13, 434
SgrBI CCGCGG 1 cut(s) 105
SgrDI CGTCGACG 1 cut(s) 754
SinI GGWCC 2 cut(s) 19, 70
SmaI CCCGGG 2 cut(s) 205, 281
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
Sse9I AATT 2 cut(s) 703, 765
SseBI AGGCCT 1 cut(s) 592
SstI GAGCTC 1 cut(s) 94
StuI AGGCCT 1 cut(s) 592
StyD4I CCNGG 7 cut(s) 66, 202, 203, 278, 279, 456, 797
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 4 cut(s) 268, 329, 422, 724
TaiI ACGT 5 cut(s) 291, 444, 498, 648, 755
TaqI TCGA 2 cut(s) 248, 755
TasI AATT 2 cut(s) 703, 765
TatI WGTACW 1 cut(s) 681
TauI GCSGC 2 cut(s) 107, 797
TfiI GAWTC 2 cut(s) 135, 811
Tru1I TTAA 2 cut(s) 161, 318
Tru9I TTAA 2 cut(s) 161, 318
TseI GCWGC 3 cut(s) 525, 697, 742
TspDTI ATGAA 2 cut(s) 428, 697
TspGWI ACGGA 3 cut(s) 179, 242, 677
TspMI CCCGGG 2 cut(s) 203, 279
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 19, 70
XapI RAATTY 2 cut(s) 703, 765
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmaI CCCGGG 2 cut(s) 203, 279
XmiI GTMKAC 1 cut(s) 755
ZraI GACGTC 1 cut(s) 753
ZrmI AGTACT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.