Rorug03G0236100

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000677
Physical Location & Seq
Reverse (-)
21869142 .. 21870503
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0236100.1

Sequence Viewer

Length: 744 bp
ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCAAATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGTTCCACTGCTTCTACTGGAGGACAATCTTCCATGGAACAACGAGGAGGAGTTCGCCAGGAGTTTGAAACTCTTCTTCTGTTCCCCGTGCACGGCGAGGACGTCTATGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

247

Amino Acids

26.46

Weight (kDa)

4.92

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 1.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21530 AT1G21530 AT1G21540 AT1G77240
fragaria_vesca FvH4_1g27170 FvH4_1g27180
malus_domestica MD09G1283000.v1.1 MD09G1283100.v1.1 MD17G1272700.v1.1 MD17G1273900.v1.1
prunus_persica Prupe.3G011200_v2.0.a1 Prupe.3G011300_v2.0.a1
pyrus_communis pycom09g19090 pycom09g19100 pycom17g27150 pycom17g27180 pycom17g27190
rosa_chinensis RchiOBHm_Chr3g0487461 RchiOBHm_Chr3g0487511 RchiOBHm_Chr3g0487561 RchiOBHm_Chr3g0487571 RchiOBHm_Chr3g0487741 RchiOBHm_Chr4g0432931
rosa_laevigata RLG00000013740 RLG00000022982 RLG00000023000 RLG00000023001 RLG00000023003
rosa_multiflora Rmu_co8229999.1_g000001 Rmu_sc0001491.1_g000005 Rmu_sc0005285.1_g000013 Rmu_sc0005285.1_g000017 Rmu_sc0005285.1_g000018 Rmu_sc0007025.1_g000002 Rmu_sc0008132.1_g000007 Rmu_sc0008132.1_g000012 Rmu_sc0009101.1_g000001 Rmu_sc0009101.1_g000002 Rmu_sc0010073.1_g000016 Rmu_sc0011808.1_g000002 Rmu_sc0011808.1_g000006 Rmu_sc0032698.1_g000001 Rmu_ssc0000018.1_g000065
rosa_roxburghii Rroxscaffold_6G00394540 Rroxscaffold_6G00394550 Rroxscaffold_6G00394740 Rroxscaffold_6G00394780
rosa_rugosa Rorug03G0234100 Rorug03G0234100 Rorug03G0236100
rosa_samantha Rh3AG282200 Rh3AG282500 Rh3AG282800 Rh3AG284200 Rh3BG317800 Rh3BG318300 Rh3BG320600 Rh3CG316300 Rh3CG316500 Rh3CG316700 Rh3CG319100 Rh3CG319200 Rh3CG319300 Rh3DG313900 Rh3DG314000 Rh3DG314300 Rh3DG314400 Rh3DG317800
rosa_wichuraiana Rw0G009700 Rw3G024990 Rw3G025000 Rw3G025010 Rw3G025020 Rw3G025200 Rw3G025210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 612
AccB7I CCANNNNNTGG 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 728
AciI CCGC 1 cut(s) 678
AcsI RAATTY 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 353, 437, 599
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 3 cut(s) 116, 346, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 5 cut(s) 31, 223, 434, 712, 734
AluI AGCT 5 cut(s) 31, 223, 434, 712, 734
Alw21I GWGCWC 2 cut(s) 600, 714
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 728
AoxI GGCC 1 cut(s) 428
ApaLI GTGCAC 1 cut(s) 596
ApeKI GCWGC 2 cut(s) 74, 317
ApoI RAATTY 1 cut(s) 201
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
Asp700I GAANNNNTTC 2 cut(s) 340, 579
AspLEI GCGC 1 cut(s) 650
AspS9I GGNCC 3 cut(s) 381, 428, 462
AsuC2I CCSGG 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 381, 462
BaeGI GKGCMC 3 cut(s) 188, 330, 600
BamHI GGATCC 5 cut(s) 147, 359, 407, 440, 488
BanII GRGCYC 2 cut(s) 286, 714
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 2 cut(s) 600, 714
BbvI GCAGC 2 cut(s) 86, 304
BccI CCATC 4 cut(s) 19, 50, 419, 733
BceAI ACGGC 2 cut(s) 96, 616
BciT130I CCWGG 3 cut(s) 118, 348, 566
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 2 cut(s) 339, 468
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 75, 318
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 2 cut(s) 76, 319
Bme1390I CCNGG 4 cut(s) 79, 118, 348, 566
Bme18I GGWCC 2 cut(s) 381, 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 381, 428, 462
BmrFI CCNGG 4 cut(s) 79, 118, 348, 566
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 4 cut(s) 117, 203, 546, 681
Bpu10I CCTNAGC 1 cut(s) 673
Bpu1102I GCTNAGC 1 cut(s) 713
BpuEI CTTGAG 3 cut(s) 137, 306, 728
BpuMI CCSGG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 4 cut(s) 330, 540, 636, 688
BsaWI WCCGGW 1 cut(s) 728
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 437, 599
Bse1I ACTGG 7 cut(s) 229, 358, 391, 400, 481, 529, 698
BseAI TCCGGA 1 cut(s) 728
BseBI CCWGG 3 cut(s) 118, 348, 566
BseDI CCNNGG 4 cut(s) 330, 540, 636, 688
BseGI GGATG 2 cut(s) 61, 725
BseLI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BseMII CTCAG 2 cut(s) 687, 727
BseNI ACTGG 7 cut(s) 229, 358, 391, 400, 481, 529, 698
BseRI GAGGAG 2 cut(s) 567, 570
BseSI GKGCMC 3 cut(s) 188, 330, 600
BseXI GCAGC 2 cut(s) 86, 304
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 600, 714
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 2 cut(s) 78, 729
BslI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 5 cut(s) 188, 286, 330, 600, 714
Bsp13I TCCGGA 1 cut(s) 728
Bsp1720I GCTNAGC 1 cut(s) 713
Bsp19I CCATGG 2 cut(s) 330, 540
BspACI CCGC 1 cut(s) 678
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 2 cut(s) 686, 726
BspEI TCCGGA 1 cut(s) 728
BsrI ACTGG 7 cut(s) 229, 358, 391, 400, 481, 529, 698
BssECI CCNNGG 4 cut(s) 330, 540, 636, 688
BssNI GRCGYC 1 cut(s) 609
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 330, 540
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 118, 348, 566
Bst4CI ACNGT 1 cut(s) 689
Bst6I CTCTTC 2 cut(s) 296, 585
BstACI GRCGYC 1 cut(s) 609
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 673, 713
BstDSI CCRYGG 3 cut(s) 330, 540, 688
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 2 cut(s) 61, 725
BstHHI GCGC 1 cut(s) 650
BstMAI GTCTC 1 cut(s) 221
BstNI CCWGG 3 cut(s) 118, 348, 566
BstNSI RCATGY 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 4 cut(s) 77, 116, 346, 564
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 3 cut(s) 188, 330, 600
BstV1I GCAGC 2 cut(s) 86, 304
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 8 cut(s) 147, 157, 210, 359, 407, 440, 488, 692
BstYI RGATCY 8 cut(s) 147, 157, 210, 359, 407, 440, 488, 692
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 3 cut(s) 330, 540, 688
BtsCI GGATG 2 cut(s) 61, 725
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 384, 513
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 1 cut(s) 650
Cfr13I GGNCC 3 cut(s) 381, 428, 462
Csp6I GTAC 1 cut(s) 351
CviAII CATG 3 cut(s) 239, 331, 541
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 2 cut(s) 673, 713
Eam1104I CTCTTC 2 cut(s) 296, 585
EarI CTCTTC 2 cut(s) 296, 585
Ecl136II GAGCTC 1 cut(s) 712
Eco130I CCWWGG 2 cut(s) 330, 540
Eco24I GRGCYC 2 cut(s) 286, 714
Eco47I GGWCC 2 cut(s) 381, 462
Eco53kI GAGCTC 1 cut(s) 712
Eco88I CYCGRG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 712
EcoO65I GGTNACC 1 cut(s) 617
EcoRII CCWGG 3 cut(s) 116, 346, 564
EcoT14I CCWWGG 2 cut(s) 330, 540
EcoT38I GRGCYC 2 cut(s) 286, 714
ErhI CCWWGG 2 cut(s) 330, 540
FaeI CATG 3 cut(s) 242, 334, 544
FaiI YATR 7 cut(s) 234, 240, 332, 542, 615, 652, 654
FatI CATG 3 cut(s) 238, 330, 540
FauNDI CATATG 1 cut(s) 652
Fnu4HI GCNGC 2 cut(s) 75, 318
FokI GGATG 2 cut(s) 68, 712
FriOI GRGCYC 2 cut(s) 286, 714
Fsp4HI GCNGC 2 cut(s) 75, 318
FspBI CTAG 2 cut(s) 339, 468
GlaI GCGC 1 cut(s) 649
GluI GCNGC 2 cut(s) 75, 318
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 4 cut(s) 117, 203, 546, 681
HaeIII GGCC 1 cut(s) 430
HapII CCGG 2 cut(s) 78, 729
HhaI GCGC 1 cut(s) 650
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 3 cut(s) 242, 334, 544
Hin6I GCGC 1 cut(s) 648
HinP1I GCGC 1 cut(s) 648
HpaII CCGG 2 cut(s) 78, 729
Hpy166II GTNNAC 3 cut(s) 384, 465, 598
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 6 cut(s) 134, 206, 271, 287, 707, 729
Hpy8I GTNNAC 3 cut(s) 384, 465, 598
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 3 cut(s) 19, 309, 598
HpyF3I CTNAG 2 cut(s) 673, 713
HpySE526I ACGT 1 cut(s) 609
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 3 cut(s) 242, 334, 544
HspAI GCGC 1 cut(s) 648
Kpn2I TCCGGA 1 cut(s) 728
LmnI GCTCC 2 cut(s) 28, 731
Lsp1109I GCAGC 2 cut(s) 86, 304
MaeI CTAG 2 cut(s) 339, 468
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 2 cut(s) 617, 680
MboII GAAGA 5 cut(s) 313, 528, 572, 575, 637
MflI RGATCY 8 cut(s) 147, 157, 210, 359, 407, 440, 488, 692
MhlI GDGCHC 5 cut(s) 188, 286, 330, 600, 714
MluCI AATT 5 cut(s) 201, 373, 421, 454, 502
MroI TCCGGA 1 cut(s) 728
MroXI GAANNNNTTC 2 cut(s) 340, 579
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 2 cut(s) 223, 434
MspI CCGG 2 cut(s) 78, 729
MspR9I CCNGG 4 cut(s) 79, 118, 348, 566
MvaI CCWGG 3 cut(s) 118, 348, 566
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 2 cut(s) 330, 540
NdeI CATATG 1 cut(s) 652
NlaIII CATG 3 cut(s) 242, 334, 544
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PciI ACATGT 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PdmI GAANNNNTTC 2 cut(s) 340, 579
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 2 cut(s) 76, 319
PscI ACATGT 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 3 cut(s) 116, 346, 564
PspEI GGTNACC 1 cut(s) 617
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 3 cut(s) 116, 346, 564
PspPI GGNCC 3 cut(s) 381, 428, 462
PsuI RGATCY 8 cut(s) 147, 157, 210, 359, 407, 440, 488, 692
PvuII CAGCTG 2 cut(s) 223, 434
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SacI GAGCTC 1 cut(s) 714
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 75, 318
Sau96I GGNCC 3 cut(s) 381, 428, 462
ScrFI CCNGG 4 cut(s) 79, 118, 348, 566
SduI GDGCHC 5 cut(s) 188, 286, 330, 600, 714
SetI ASST 9 cut(s) 33, 122, 225, 308, 436, 612, 646, 714, 736
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 381, 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 4 cut(s) 152, 285, 321, 707
SmoI CTYRAG 4 cut(s) 152, 285, 321, 707
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 5 cut(s) 201, 373, 421, 454, 502
SsiI CCGC 1 cut(s) 678
SspMI CTAG 2 cut(s) 339, 468
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 4 cut(s) 77, 116, 346, 564
StyI CCWWGG 2 cut(s) 330, 540
TaaI ACNGT 1 cut(s) 689
TaiI ACGT 1 cut(s) 612
TaqI TCGA 3 cut(s) 51, 286, 414
TasI AATT 5 cut(s) 201, 373, 421, 454, 502
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 391, 520
TseI GCWGC 2 cut(s) 74, 317
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 391, 520
Van91I CCANNNNNTGG 1 cut(s) 437
VneI GTGCAC 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 381, 462
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 340, 579
XspI CTAG 2 cut(s) 339, 468
ZraI GACGTC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.