AT1G14680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000497
Physical Location & Seq
Forward (+)
5040754 .. 5041967
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14680.1

Sequence Viewer

Length: 873 bp
ATGGATCTCTCGCGAGAAGTCGATGACTTTATCAAAGAGACAATCGATCACTCTTTAGGGCTTCCGATATCCATGGACGTTCTCCAGAAAAAGCTCTACACGGCGGAAGAATCTCAGCGTCGTCTCCGTGAACAGTATCTATCTCTGGTTTCGAGATTGAAAGAGAAAGAAAAAGTAATCGATCTCGTTAGATCCGAAGCGAGTATGAATGCCCAGTCGCTGAAGAAATTCGTCGAAGAGAATCAGAAATTGGGAAGCGAGCGCGAGGATTTGGTGAATCAGTGTAAGAAGTGGGAAAAAGAATGCTTTCTTTATCATCAAGATCGTGAATCACTCATGGAGTTCGGGAACGAAACTGACGAAAGGGCTAGAGAAGCAGAATCTAGGGTTCGTGAATTGGAGGAAGAAGTTAGAAAAATGTCTGATGAAATCAAGAGCCGGATCGAATCTGAAGAAGATTGTTTGGTTGATTCAATATTGGCATCGTTCGTTAGTAAAGATGAGAGTATATCATTGGGGCGTATCTTCTTGGAGGCTAATAGTGAAGAAGACAAATGTTGTGAAACTTTGTTGAGGAAATGGGATCAGTTAAAGCCAACGACGCAAAAGTTTGTGTCTTTAGTGTCAATGGTGAAGAGAATTGAAAAGGAGAAAGAATGTCTCATTATGAATCTTGCTAAAGCAGAGCAAGAAGTTGAACTTGTGAGCGAGCAAAACAGAGAGCTGGATAGAGAAAACCGCAAGTTTTTGAGGCAATGTTCTGCAGAGAGAAGCCATGGATCTAACAAGTTCAACAAGAGAAAGAGTATCAAGATGATGAGTAGTCCGATTGAGAAGAGGATTGAATTGAGCAGCCAAGAATTTATCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

34.19

Weight (kDa)

5.25

Isoelectric Point (pI)

62.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 13, 264
AciI CCGC 2 cut(s) 104, 739
AclWI GGATC 5 cut(s) 12, 186, 449, 591, 787
AcsI RAATTY 2 cut(s) 227, 860
AcuI CTGAAG 2 cut(s) 242, 471
AgsI TTSAA 6 cut(s) 160, 474, 644, 698, 793, 845
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 2 cut(s) 94, 724
AluI AGCT 2 cut(s) 94, 724
Alw26I GTCTC 3 cut(s) 32, 128, 665
AlwI GGATC 5 cut(s) 12, 186, 449, 591, 787
AlwNI CAGNNNCTG 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 852
ApoI RAATTY 2 cut(s) 227, 860
Asp700I GAANNNNTTC 2 cut(s) 227, 306
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 286, 643
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 864
BceAI ACGGC 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 32, 128, 665
BfaI CTAG 2 cut(s) 369, 384
BfmI CTRYAG 1 cut(s) 762
BisI GCNGC 1 cut(s) 853
BlsI GCNGC 1 cut(s) 854
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 491
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 68
Bsa29I ATCGAT 3 cut(s) 45, 180, 867
BsaJI CCNNGG 2 cut(s) 72, 775
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 761
BseCI ATCGAT 3 cut(s) 45, 180, 867
BseDI CCNNGG 2 cut(s) 72, 775
BseMI GCAATG 1 cut(s) 761
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 864
Bsh1236I CGCG 2 cut(s) 13, 264
BshVI ATCGAT 3 cut(s) 45, 180, 867
BsiSI CCGG 1 cut(s) 439
BsmAI GTCTC 3 cut(s) 32, 128, 665
BsmBI CGTCTC 1 cut(s) 128
BsmI GAATGC 2 cut(s) 214, 308
Bsp143I GATC 8 cut(s) 4, 46, 181, 191, 322, 441, 583, 779
Bsp19I CCATGG 2 cut(s) 72, 775
Bsp68I TCGCGA 1 cut(s) 13
BspACI CCGC 2 cut(s) 104, 739
BspCNI CTCAG 1 cut(s) 127
BspDI ATCGAT 3 cut(s) 45, 180, 867
BspFNI CGCG 2 cut(s) 13, 264
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 5 cut(s) 12, 186, 449, 591, 787
BsrDI GCAATG 1 cut(s) 761
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 72, 775
BssMI GATC 8 cut(s) 4, 46, 181, 191, 322, 441, 583, 779
BssT1I CCWWGG 2 cut(s) 72, 775
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 3 cut(s) 231, 629, 830
BstC8I GCNNGC 2 cut(s) 260, 710
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 72, 775
BstFNI CGCG 2 cut(s) 13, 264
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 8 cut(s) 7, 49, 184, 194, 325, 444, 586, 782
BstMAI GTCTC 3 cut(s) 32, 128, 665
BstMBI GATC 8 cut(s) 4, 46, 181, 191, 322, 441, 583, 779
BstMWI GCNNNNNNNGC 2 cut(s) 374, 601
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 2 cut(s) 13, 264
BstV1I GCAGC 1 cut(s) 864
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 3 cut(s) 4, 191, 779
BstYI RGATCY 3 cut(s) 4, 191, 779
Bsu15I ATCGAT 3 cut(s) 45, 180, 867
BsuTUI ATCGAT 3 cut(s) 45, 180, 867
BtgI CCRYGG 2 cut(s) 72, 775
BtsIMutI CAGTG 1 cut(s) 287
BtuMI TCGCGA 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 260, 710
CaiI CAGNNNCTG 1 cut(s) 220
CfoI GCGC 1 cut(s) 264
ClaI ATCGAT 3 cut(s) 45, 180, 867
CseI GACGC 2 cut(s) 107, 610
CviAII CATG 3 cut(s) 73, 337, 776
CviJI RGCY 9 cut(s) 61, 94, 368, 438, 536, 595, 724, 774, 855
CviKI_1 RGCY 9 cut(s) 61, 94, 368, 438, 536, 595, 724, 774, 855
DdeI CTNAG 1 cut(s) 114
DpnI GATC 8 cut(s) 6, 48, 183, 193, 324, 443, 585, 781
DpnII GATC 8 cut(s) 4, 46, 181, 191, 322, 441, 583, 779
Eam1104I CTCTTC 3 cut(s) 231, 629, 830
EarI CTCTTC 3 cut(s) 231, 629, 830
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 72, 775
Eco32I GATATC 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 242, 471
EcoRV GATATC 1 cut(s) 69
EcoT14I CCWWGG 2 cut(s) 72, 775
ErhI CCWWGG 2 cut(s) 72, 775
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 76, 340, 779
FaiI YATR 6 cut(s) 74, 206, 338, 509, 668, 777
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FatI CATG 3 cut(s) 72, 336, 775
Fnu4HI GCNGC 1 cut(s) 853
Fsp4HI GCNGC 1 cut(s) 853
FspBI CTAG 2 cut(s) 369, 384
GlaI GCGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 853
GsuI CTGGAG 1 cut(s) 68
HapII CCGG 1 cut(s) 439
HgaI GACGC 2 cut(s) 107, 610
HhaI GCGC 1 cut(s) 264
Hin1II CATG 3 cut(s) 76, 340, 779
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 8 cut(s) 110, 241, 277, 329, 380, 446, 470, 670
HpaII CCGG 1 cut(s) 439
HphI GGTGA 2 cut(s) 286, 643
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 6 cut(s) 66, 196, 246, 424, 451, 828
Hpy188III TCNNGA 9 cut(s) 12, 85, 153, 320, 326, 346, 392, 433, 811
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 3 cut(s) 123, 236, 604
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 601
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 3 cut(s) 76, 340, 779
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 8 cut(s) 4, 46, 181, 191, 322, 441, 583, 779
LpnPI CCDG 5 cut(s) 98, 131, 227, 452, 710
Lsp1109I GCAGC 1 cut(s) 864
LweI GCATC 1 cut(s) 491
MaeI CTAG 2 cut(s) 369, 384
MaeII ACGT 1 cut(s) 78
MalI GATC 8 cut(s) 6, 48, 183, 193, 324, 443, 585, 781
MboI GATC 8 cut(s) 4, 46, 181, 191, 322, 441, 583, 779
MflI RGATCY 3 cut(s) 4, 191, 779
MluCI AATT 6 cut(s) 227, 248, 395, 639, 845, 860
MnlI CCTC 6 cut(s) 259, 394, 526, 567, 744, 831
MroXI GAANNNNTTC 2 cut(s) 227, 306
MseI TTAA 1 cut(s) 590
MspI CCGG 1 cut(s) 439
Mva1269I GAATGC 2 cut(s) 214, 308
MvnI CGCG 2 cut(s) 13, 264
MwoI GCNNNNNNNGC 2 cut(s) 374, 601
NcoI CCATGG 2 cut(s) 72, 775
NdeII GATC 8 cut(s) 4, 46, 181, 191, 322, 441, 583, 779
NlaIII CATG 3 cut(s) 76, 340, 779
NruI TCGCGA 1 cut(s) 13
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 357
PctI GAATGC 2 cut(s) 214, 308
PdmI GAANNNNTTC 2 cut(s) 227, 306
PfeI GAWTC 8 cut(s) 110, 241, 277, 329, 380, 446, 470, 670
PkrI GCNGC 1 cut(s) 854
PstI CTGCAG 1 cut(s) 766
PstNI CAGNNNCTG 1 cut(s) 220
PsuI RGATCY 3 cut(s) 4, 191, 779
RruI TCGCGA 1 cut(s) 13
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 1 cut(s) 853
Sau3AI GATC 8 cut(s) 4, 46, 181, 191, 322, 441, 583, 779
SetI ASST 3 cut(s) 81, 96, 726
SfaNI GCATC 1 cut(s) 491
SfcI CTRYAG 1 cut(s) 762
Sse9I AATT 6 cut(s) 227, 248, 395, 639, 845, 860
SsiI CCGC 2 cut(s) 104, 739
SspI AATATT 1 cut(s) 477
SspMI CTAG 2 cut(s) 369, 384
StyI CCWWGG 2 cut(s) 72, 775
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 81
TaqI TCGA 7 cut(s) 21, 45, 152, 180, 234, 444, 867
TasI AATT 6 cut(s) 227, 248, 395, 639, 845, 860
TfiI GAWTC 8 cut(s) 110, 241, 277, 329, 380, 446, 470, 670
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 1 cut(s) 287
TseI GCWGC 1 cut(s) 852
TspDTI ATGAA 3 cut(s) 221, 441, 683
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 287
XapI RAATTY 2 cut(s) 227, 860
XmnI GAANNNNTTC 2 cut(s) 227, 306
XspI CTAG 2 cut(s) 369, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.