Rh5CG335100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000497
Physical Location & Seq
Forward (+)
37954656 .. 37955336
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG335100.1

Sequence Viewer

Length: 264 bp
ATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTTAAGAAGGATAAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCAAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAACAATTCTGGTTCTGTTGGAAAGCATACTGATGTATCAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.09

Weight (kDa)

9.6

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 50, 150
AfaI GTAC 1 cut(s) 203
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 58
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 153
BaeI ACNNNNGTAYC 1 cut(s) 234
BceAI ACGGC 1 cut(s) 4
BfaI CTAG 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 86
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 149
BshFI GGCC 1 cut(s) 19
BsnI GGCC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 205
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 153
BspTI CTTAAG 1 cut(s) 86
BssMI GATC 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 51, 107
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 2 cut(s) 12, 19
CviKI_1 RGCY 2 cut(s) 12, 19
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 51, 107
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 50, 150
FaiI YATR 1 cut(s) 243
FspBI CTAG 1 cut(s) 44
FspEI CC 9 cut(s) 33, 77, 94, 119, 122, 194, 210, 218, 219
HaeIII GGCC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 85
HpyF3I CTNAG 2 cut(s) 51, 107
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 1 cut(s) 210
MaeI CTAG 1 cut(s) 44
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 4 cut(s) 82, 110, 143, 167
MluCI AATT 2 cut(s) 143, 220
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 3 cut(s) 9, 127, 130
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 86
NdeII GATC 1 cut(s) 111
NspV TTCGAA 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 220
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 1 cut(s) 111
SetI ASST 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 153
SgeI CNNG 4 cut(s) 25, 56, 220, 237
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 13, 86
SmoI CTYRAG 2 cut(s) 13, 86
Sse9I AATT 2 cut(s) 143, 220
SsiI CCGC 1 cut(s) 205
SspMI CTAG 1 cut(s) 44
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 143, 220
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 93, 189
Vha464I CTTAAG 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.