Rh5DG287700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000497
Physical Location & Seq
Forward (+)
35795600 .. 35799221
3622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG287700.1

Sequence Viewer

Length: 369 bp
ATGTGTTTTTGGTTTCAGGCCGAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTTCGGGTCCAAGAGTTGGAGGATGAATTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATTGACCGAAGATGAGACTGGGGCGGCATGTGCATTTTTGGAGGCCAATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

4.39

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 75
AccB7I CCANNNNNTGG 1 cut(s) 205
AciI CCGC 2 cut(s) 62, 338
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 2 cut(s) 220, 284
AhlI ACTAGT 1 cut(s) 292
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 49, 323
AoxI GGCC 3 cut(s) 18, 174, 357
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 174, 196
AsuHPI GGTGA 2 cut(s) 94, 267
AvaII GGWCC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 139
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 49, 323
BcuI ACTAGT 1 cut(s) 292
BfaI CTAG 2 cut(s) 59, 293
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 2 cut(s) 63, 339
BlsI GCNGC 2 cut(s) 64, 340
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 174, 196
BmiI GGNNCC 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 21, 177
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 21, 177
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 59
BshFI GGCC 3 cut(s) 20, 176, 359
BsiHKAI GWGCWC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 49, 323
BsnI GGCC 3 cut(s) 20, 176, 359
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 2 cut(s) 62, 338
BspANI GGCC 3 cut(s) 20, 176, 359
BspCNI CTCAG 1 cut(s) 178
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 21, 177
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 2 cut(s) 49, 323
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 71, 182, 344
BstNSI RCATGY 1 cut(s) 345
BsuRI GGCC 3 cut(s) 20, 176, 359
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 116
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 174, 196
CviAII CATG 2 cut(s) 128, 342
CviJI RGCY 9 cut(s) 20, 26, 140, 176, 185, 247, 273, 359, 366
CviKI_1 RGCY 9 cut(s) 20, 26, 140, 176, 185, 247, 273, 359, 366
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 131, 345
FaiI YATR 3 cut(s) 123, 129, 343
FatI CATG 2 cut(s) 127, 341
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 63, 339
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 63, 339
FspAI RTGCGCAY 1 cut(s) 75
FspBI CTAG 2 cut(s) 59, 293
FspI TGCGCA 1 cut(s) 75
GlaI GCGC 1 cut(s) 75
GluI GCNGC 2 cut(s) 63, 339
HaeIII GGCC 3 cut(s) 20, 176, 359
HhaI GCGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 131, 345
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 4 cut(s) 49, 85, 257, 299
HphI GGTGA 2 cut(s) 94, 267
Hpy188I TCNGA 2 cut(s) 54, 155
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 100, 263
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 182, 344
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 2 cut(s) 131, 345
HspAI GCGC 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 2, 65, 182, 291, 318
LweI GCATC 1 cut(s) 85
MaeI CTAG 2 cut(s) 59, 293
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 2 cut(s) 296, 335
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 1 cut(s) 215
MlyI GAGTC 2 cut(s) 94, 308
MmeI TCCRAC 2 cut(s) 81, 186
MwoI GCNNNNNNNGC 3 cut(s) 71, 182, 344
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 131, 345
NlaIV GGNNCC 1 cut(s) 197
NmeAIII GCCGAG 1 cut(s) 46
NsbI TGCGCA 1 cut(s) 75
NspI RCATGY 1 cut(s) 345
PagI TCATGA 1 cut(s) 127
PfeI GAWTC 2 cut(s) 49, 257
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 2 cut(s) 64, 340
PleI GAGTC 2 cut(s) 93, 307
PpsI GAGTC 2 cut(s) 93, 307
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 2 cut(s) 174, 196
SatI GCNGC 2 cut(s) 63, 339
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 174, 196
SchI GAGTC 2 cut(s) 94, 308
SduI GDGCHC 1 cut(s) 116
SetI ASST 2 cut(s) 280, 368
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 292
Sse9I AATT 1 cut(s) 215
SsiI CCGC 2 cut(s) 62, 338
SspMI CTAG 2 cut(s) 59, 293
StyI CCWWGG 1 cut(s) 177
TaqII GACCGA 2 cut(s) 147, 335
TasI AATT 1 cut(s) 215
TauI GCSGC 2 cut(s) 65, 341
TfiI GAWTC 2 cut(s) 49, 257
TscAI CASTG 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 228, 249, 249
TspRI CASTG 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 196
XceI RCATGY 1 cut(s) 345
XspI CTAG 2 cut(s) 59, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.