Rroxscaffold_5G00337240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000497
Physical Location & Seq
Reverse (-)
5301146 .. 5303813
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337240.1

Sequence Viewer

Length: 384 bp
ATGCTTAAAATTTCTTTTCGTTTACATGGCAGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTGGAGAAGGATAAAGAACATCAAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGAAGTACTGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGGTGAGAGAAAGGGAGAAGAATAGCTTTGATGGAAAGCATTCTTGTAATTGCAAAACATATAGGTCTGGGTCCGGACACCAAGTGTGTGTATGTTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

9.11

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 353
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 71, 171
AdeI CACNNNGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 2 cut(s) 79, 380
AluBI AGCT 3 cut(s) 33, 200, 306
AluI AGCT 3 cut(s) 33, 200, 306
AlwI GGATC 1 cut(s) 140
Aor13HI TCCGGA 1 cut(s) 353
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 2 cut(s) 241, 319
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 295
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 1 cut(s) 351
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BbvI GCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 248, 305
BceAI ACGGC 1 cut(s) 25
BfaI CTAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 353
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 354
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 40
Bsp119I TTCGAA 1 cut(s) 174
Bsp13I TCCGGA 1 cut(s) 353
Bsp143I GATC 1 cut(s) 132
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 174
BsrI ACTGG 1 cut(s) 111
BssMI GATC 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 72
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 26
CviJI RGCY 4 cut(s) 33, 40, 200, 306
CviKI_1 RGCY 4 cut(s) 33, 40, 200, 306
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
DraIII CACNNNGTG 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 351
Eco57I CTGAAG 2 cut(s) 71, 171
FaeI CATG 1 cut(s) 29
FaiI YATR 5 cut(s) 27, 264, 340, 342, 373
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 354
Hin1II CATG 1 cut(s) 29
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 90, 253
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 106, 274
HpyCH4V TGCA 2 cut(s) 228, 333
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 1 cut(s) 29
Kpn2I TCCGGA 1 cut(s) 353
Kzo9I GATC 1 cut(s) 132
LpnPI CCDG 4 cut(s) 92, 231, 333, 367
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 1 cut(s) 65
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 5 cut(s) 103, 131, 164, 188, 310
MluCI AATT 4 cut(s) 9, 164, 241, 328
MnlI CCTC 3 cut(s) 30, 148, 151
MroI TCCGGA 1 cut(s) 353
MroXI GAANNNNTTC 2 cut(s) 241, 319
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 319
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 352
NspV TTCGAA 1 cut(s) 174
PctI GAATGC 1 cut(s) 319
PdmI GAANNNNTTC 2 cut(s) 241, 319
PkrI GCNGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 351
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 351
ScaI AGTACT 1 cut(s) 224
SetI ASST 6 cut(s) 35, 162, 202, 285, 308, 347
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 4 cut(s) 9, 164, 241, 328
SspMI CTAG 1 cut(s) 65
TaqI TCGA 1 cut(s) 174
TasI AATT 4 cut(s) 9, 164, 241, 328
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 111
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 114, 210
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 1 cut(s) 9
XmnI GAANNNNTTC 2 cut(s) 241, 319
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.