FvH4_5g36300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000497
Physical Location & Seq
Forward (+)
26624710 .. 26628021
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36300.t1

Sequence Viewer

Length: 999 bp
ATGGATCTGCCGCAAGAAGTTGACGGCTTCATCAAAGAGTCGATTGACCACACCCTGGGCCTCCCCGTCTCCGCTCAAACGCTCGAGTTGAAGCTCCGTTGCTCCGAAGAAGCCCGGCGACGCCTTCGCGACCAGTACAGCCTTCTACTGGCGAAATTGAAAGAGAAGGATCAAGCTCTGGAGCGAACTAGGGCGGAGGCGTGTATGAATGCTCAGGCGTTGAGGAAGTTTGTGGAGGAGAATCAGAGGCTGGCGGCGGAGTGTGCGCATTTGGTGAGCCAGTGTAACAAGTTGGAGAAGGAGTGTGCGCTTTATGATCATGACCGAGAGGCGTTGATGGATTTCGGTAACGAGGCTGACCAGAGGGCCAAGGAGGCTGAGTTTCGGGTGCAAGAGTTGGAGGATGAACTTGAAGAGTTGAGGGAAGAGTTGAAGTTCTTCAAGAATGAGTACGAGAAGCTTTCGGTTGATTCATCTGTTGAAGGCTCACCTGTTGAAGACAAACTAGTGGAGTCTGTTTTAGCAACCTTGACCACTGATGAACCTGGGGCGGCCTGTGCATATTTGGAGGCCAATAGTGGAAATGAGGCTTGTCAAAGCTTGCTAAATATGTGGAATAGCTTGAGGCCTTCATCCCAGAAAGTTTTATCAGTAGTTGCTGAGTTGAAAAATCTTCAAAAGGATAAAGAACATCTAAGGGTCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTACTTTTTGAAGAAAACAAAGTGTTAGATGAAGCTAATAAAAGATTGCTGAAGCAGTACCGCAAGGAAAGAAACAGTTGTGGTTCTGGTGGGAAGCATACTGATACTGTATCAGCAAAGTCAAACAAGCGAAAATCTAGCTCTAAGATGATGAGCAGCAGCCCGATTCAGGGGAAGATTGATTTCAGTGACCAAGAATTAGCAAGACAGCCTCTCTCACCCTTGCGTTGTAACTCCCCTAACTCAAGACTGCATAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

37.73

Weight (kDa)

5.55

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 267
AccB7I CCANNNNNTGG 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 129
AciI CCGC 7 cut(s) 11, 72, 194, 254, 257, 551, 793
AclWI GGATC 2 cut(s) 12, 177
AcuI CTGAAG 2 cut(s) 738, 803
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 3 cut(s) 137, 452, 791
AfiI CCNNNNNNNGG 4 cut(s) 55, 148, 901, 902
AhlI ACTAGT 1 cut(s) 505
AjnI CCWGG 2 cut(s) 54, 544
AluBI AGCT 7 cut(s) 94, 176, 460, 600, 621, 767, 873
AluI AGCT 7 cut(s) 94, 176, 460, 600, 621, 767, 873
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 12, 177
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 5 cut(s) 58, 366, 552, 570, 626
ApeKI GCWGC 2 cut(s) 888, 891
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 2 cut(s) 268, 310
AspS9I GGNCC 2 cut(s) 58, 366
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 3 cut(s) 286, 480, 942
AvaI CYCGRG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 900, 903
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 56, 546
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 505
BfaI CTAG 3 cut(s) 189, 506, 870
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 5 cut(s) 11, 255, 552, 889, 892
BlsI GCNGC 5 cut(s) 12, 256, 553, 890, 893
Bme1390I CCNGG 3 cut(s) 56, 115, 546
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 58, 366
BmrFI CCNGG 3 cut(s) 56, 115, 546
BpiI GAAGAC 1 cut(s) 504
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 643, 961
BpuMI CCSGG 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 4 cut(s) 54, 55, 369, 545
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 365, 395
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 148, 901, 902
Bse1I ACTGG 3 cut(s) 133, 153, 280
BseBI CCWGG 2 cut(s) 56, 546
BseDI CCNNGG 4 cut(s) 54, 55, 369, 545
BseGI GGATG 2 cut(s) 409, 632
BseLI CCNNNNNNNGG 4 cut(s) 55, 148, 901, 902
BseMII CTCAG 3 cut(s) 227, 369, 651
BseNI ACTGG 3 cut(s) 133, 153, 280
BseRI GAGGAG 2 cut(s) 251, 737
BseXI GCAGC 2 cut(s) 900, 903
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 5 cut(s) 60, 368, 554, 572, 628
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 4 cut(s) 55, 148, 901, 902
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 5 cut(s) 60, 368, 554, 572, 628
BsoBI CYCGRG 1 cut(s) 83
Bsp143I GATC 3 cut(s) 4, 169, 316
Bsp68I TCGCGA 1 cut(s) 129
BspACI CCGC 7 cut(s) 11, 72, 194, 254, 257, 551, 793
BspANI GGCC 5 cut(s) 60, 368, 554, 572, 628
BspCNI CTCAG 3 cut(s) 226, 370, 652
BspFNI CGCG 1 cut(s) 129
BspHI TCATGA 1 cut(s) 319
BspPI GGATC 2 cut(s) 12, 177
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 3 cut(s) 133, 153, 280
BssECI CCNNGG 4 cut(s) 54, 55, 369, 545
BssMI GATC 3 cut(s) 4, 169, 316
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 56, 546
Bst4CI ACNGT 2 cut(s) 809, 841
Bst6I CTCTTC 3 cut(s) 408, 420, 714
BstACI GRCGYC 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 252, 602
BstDEI CTNAG 5 cut(s) 213, 378, 660, 695, 876
BstF5I GGATG 2 cut(s) 409, 632
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 2 cut(s) 268, 310
BstKTI GATC 3 cut(s) 7, 172, 319
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 4, 169, 316
BstMWI GCNNNNNNNGC 4 cut(s) 263, 374, 557, 991
BstNI CCWGG 2 cut(s) 56, 546
BstSCI CCNGG 3 cut(s) 54, 113, 544
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 900, 903
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 5 cut(s) 60, 368, 554, 572, 628
BtsCI GGATG 2 cut(s) 409, 632
BtsIMutI CAGTG 3 cut(s) 287, 534, 925
BtuMI TCGCGA 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 252, 602
CaiI CAGNNNCTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 319
CfoI GCGC 2 cut(s) 268, 310
Cfr13I GGNCC 2 cut(s) 58, 366
CseI GACGC 1 cut(s) 129
Csp6I GTAC 3 cut(s) 136, 451, 790
CviAII CATG 1 cut(s) 320
CviQI GTAC 3 cut(s) 136, 451, 790
DdeI CTNAG 5 cut(s) 213, 378, 660, 695, 876
DpnI GATC 3 cut(s) 6, 171, 318
DpnII GATC 3 cut(s) 4, 169, 316
Eam1104I CTCTTC 3 cut(s) 408, 420, 714
EarI CTCTTC 3 cut(s) 408, 420, 714
EciI GGCGGA 2 cut(s) 209, 272
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 628
Eco57I CTGAAG 2 cut(s) 738, 803
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 54, 544
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 323
FaiI YATR 7 cut(s) 206, 315, 321, 562, 611, 831, 987
FatI CATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 5 cut(s) 11, 255, 552, 889, 892
FokI GGATG 2 cut(s) 416, 619
Fsp4HI GCNGC 5 cut(s) 11, 255, 552, 889, 892
FspAI RTGCGCAY 1 cut(s) 267
FspBI CTAG 3 cut(s) 189, 506, 870
FspI TGCGCA 1 cut(s) 267
GlaI GCGC 2 cut(s) 267, 309
GluI GCNGC 5 cut(s) 11, 255, 552, 889, 892
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 5 cut(s) 60, 368, 554, 572, 628
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 129
HhaI GCGC 2 cut(s) 268, 310
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 2 cut(s) 266, 308
HinP1I GCGC 2 cut(s) 266, 308
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 2 cut(s) 458, 598
HinfI GANTC 5 cut(s) 38, 241, 470, 512, 898
HpaII CCGG 1 cut(s) 115
HphI GGTGA 3 cut(s) 286, 480, 942
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 106, 246
Hpy188III TCNNGA 5 cut(s) 128, 179, 320, 442, 978
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 6 cut(s) 134, 152, 160, 292, 476, 639
HpyCH4III ACNGT 2 cut(s) 809, 841
HpyCH4V TGCA 3 cut(s) 391, 560, 985
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 374, 557, 991
HpyF3I CTNAG 5 cut(s) 213, 378, 660, 695, 876
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 2 cut(s) 266, 308
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 3 cut(s) 4, 169, 316
LmnI GCTCC 3 cut(s) 99, 107, 181
Lsp1109I GCAGC 2 cut(s) 900, 903
MaeI CTAG 3 cut(s) 189, 506, 870
MaeIII GTNAC 4 cut(s) 284, 347, 920, 962
MalI GATC 3 cut(s) 6, 171, 318
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 4, 169, 316
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 155, 731, 929
MlyI GAGTC 2 cut(s) 47, 521
MmeI TCCRAC 2 cut(s) 273, 378
MroXI GAANNNNTTC 1 cut(s) 437
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 3 cut(s) 56, 115, 546
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 2 cut(s) 56, 546
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 263, 374, 557, 991
NciI CCSGG 1 cut(s) 115
NdeII GATC 3 cut(s) 4, 169, 316
NlaIII CATG 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 920
NruI TCGCGA 1 cut(s) 129
NsbI TGCGCA 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 319
PasI CCCWGGG 1 cut(s) 55
PceI AGGCCT 1 cut(s) 628
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 241, 470, 898
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 5 cut(s) 12, 256, 553, 890, 893
PleI GAGTC 2 cut(s) 46, 520
PpsI GAGTC 2 cut(s) 46, 520
Psp6I CCWGG 2 cut(s) 54, 544
PspGI CCWGG 2 cut(s) 54, 544
PspPI GGNCC 2 cut(s) 58, 366
PspXI VCTCGAGB 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 4
RruI TCGCGA 1 cut(s) 129
RsaI GTAC 3 cut(s) 137, 452, 791
RsaNI GTAC 3 cut(s) 136, 451, 790
SatI GCNGC 5 cut(s) 11, 255, 552, 889, 892
Sau3AI GATC 3 cut(s) 4, 169, 316
Sau96I GGNCC 2 cut(s) 58, 366
SchI GAGTC 2 cut(s) 47, 521
ScrFI CCNGG 3 cut(s) 56, 115, 546
Sfr274I CTCGAG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 83
SmlI CTYRAG 3 cut(s) 83, 622, 976
SmoI CTYRAG 3 cut(s) 83, 622, 976
SpeI ACTAGT 1 cut(s) 505
Sse9I AATT 3 cut(s) 155, 731, 929
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 7 cut(s) 11, 72, 194, 254, 257, 551, 793
SspMI CTAG 3 cut(s) 189, 506, 870
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 3 cut(s) 54, 113, 544
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 809, 841
TaqI TCGA 2 cut(s) 41, 84
TaqII GACCGA 1 cut(s) 339
TasI AATT 3 cut(s) 155, 731, 929
TatI WGTACW 1 cut(s) 135
TauI GCSGC 3 cut(s) 13, 257, 554
TfiI GAWTC 3 cut(s) 241, 470, 898
TscAI CASTG 3 cut(s) 287, 541, 925
TseFI GTSAC 1 cut(s) 920
TseI GCWGC 2 cut(s) 888, 891
Tsp45I GTSAC 1 cut(s) 920
TspDTI ATGAA 7 cut(s) 19, 221, 420, 462, 555, 621, 777
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 3 cut(s) 287, 541, 925
Van91I CCANNNNNTGG 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 3 cut(s) 189, 506, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.