Rh6DG317800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000497
Physical Location & Seq
Forward (+)
52010894 .. 52015986
5093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG317800.1

Sequence Viewer

Length: 228 bp
ATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTTGAGAAGGATAAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGTCGGATAATATGATGATGGGTTCCCGCTTGGAGCGCGTGAAAGTGGCCCCCACCTTGGATTGGACCAAACGAAAGTCTCTCCTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.69

Weight (kDa)

9.16

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 174
AciI CCGC 1 cut(s) 163
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 50, 150
AfiI CCNNNNNNNGG 2 cut(s) 193, 198
AgsI TTSAA 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 119
AoxI GGCC 2 cut(s) 17, 183
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 184, 201
AvaII GGWCC 1 cut(s) 201
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 4
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 184, 201
BmiI GGNNCC 2 cut(s) 160, 186
BpuEI CTTGAG 2 cut(s) 34, 107
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 198
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 193, 198
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 19, 185
BslI CCNNNNNNNGG 2 cut(s) 193, 198
BsmAI GTCTC 1 cut(s) 219
BsnI GGCC 2 cut(s) 19, 185
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 163
BspANI GGCC 2 cut(s) 19, 185
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 160, 186
BspPI GGATC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 51, 107
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstUI CGCG 1 cut(s) 174
BsuRI GGCC 2 cut(s) 19, 185
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 184, 201
CviJI RGCY 3 cut(s) 12, 19, 185
CviKI_1 RGCY 3 cut(s) 12, 19, 185
DdeI CTNAG 2 cut(s) 51, 107
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 50, 150
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaiI YATR 1 cut(s) 149
FauI CCCGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 173
HaeIII GGCC 2 cut(s) 19, 185
HhaI GCGC 1 cut(s) 174
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 69, 142
HpyAV CCTTC 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 51, 107
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 169
MaeI CTAG 1 cut(s) 44
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 3 cut(s) 82, 110, 143
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 9, 127
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeII GATC 1 cut(s) 111
NlaIV GGNNCC 2 cut(s) 160, 186
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 160, 186
PspPI GGNCC 2 cut(s) 184, 201
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 2 cut(s) 184, 201
SchI GAGTC 1 cut(s) 146
SetI ASST 1 cut(s) 194
SgeI CNNG 8 cut(s) 25, 56, 98, 174, 178, 185, 187, 205
SinI GGWCC 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 13, 86
SmoI CTYRAG 2 cut(s) 13, 86
SsiI CCGC 1 cut(s) 163
SspMI CTAG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 201
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.