Rroxscaffold_3G00223120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000497
Physical Location & Seq
Reverse (-)
6243604 .. 6247598
3995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223120.1

Sequence Viewer

Length: 1026 bp
ATGGATCCTCTTCCGCAAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTTGGCCTCCCCGTGTCCACGCAGACTCTCGAGTTGAAGCTCCGGTGCTCGGAAGCCGCGAGGAGACGGCTGCGCGACCAGTACACGGTTCTACTCGCCAAATTGAAAGAGAAGGATCAAGCTCTGGAGCGATCTAGGGCCGAGGCTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCGGAGTGTGCGCATCTGGTGAGCCAGTGCAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTTCGGGTCGAAGAGTTGGAGGATGAACTGGGAGAATTGAGGGAAGAGTTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGTTGATTCATCTGCTGATGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATTGACCAAAGATGAGACTGGGGCGGCATGTGCATTTTTGGAGGCCAATAGCGGAAATGAGTCGTGTCAAAGGTTGCTAAATATGTGGAATGGTGGCAGCTTGAGGCCGTCATCTCAAAAAGTTCTATCACTAGTTGCTGAGTTGAAAACACTTCAAAAGAATAATGAAACACTTGAGAAGGATAAAGAACACCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTGAAGCAGTACCGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGTCAAACAAGCGAAAATCTAGCTCTAAGGTGATGAGCTGCAGCCCGATTCAGGGGAAGATCGATTTCAGTGACCAAGAATCAGCAAGACAACCTCTCTCACCCTTGCGTTGTAACTCCCCTAACTCAAGACTGCATAAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.86

Weight (kDa)

5.56

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 270
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 116, 132
AciI CCGC 7 cut(s) 14, 114, 257, 260, 554, 582, 823
AclWI GGATC 3 cut(s) 12, 180, 737
AcuI CTGAAG 2 cut(s) 768, 833
AfaI GTAC 2 cut(s) 140, 821
AfiI CCNNNNNNNGG 4 cut(s) 106, 142, 928, 929
AgsI TTSAA 6 cut(s) 94, 163, 436, 500, 676, 686
AhlI ACTAGT 2 cut(s) 508, 661
AluBI AGCT 6 cut(s) 97, 179, 630, 797, 900, 915
AluI AGCT 6 cut(s) 97, 179, 630, 797, 900, 915
Alw21I GWGCWC 2 cut(s) 107, 311
Alw26I GTCTC 3 cut(s) 115, 244, 539
AlwI GGATC 3 cut(s) 12, 180, 737
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 5 cut(s) 61, 195, 369, 573, 635
ApeKI GCWGC 4 cut(s) 127, 627, 915, 918
Asp700I GAANNNNTTC 1 cut(s) 838
AspLEI GCGC 2 cut(s) 132, 271
AspS9I GGNCC 2 cut(s) 195, 369
AsuHPI GGTGA 4 cut(s) 289, 483, 919, 969
AsuII TTCGAA 1 cut(s) 771
AvaI CYCGRG 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 725
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 107, 311
BbvI GCAGC 4 cut(s) 114, 639, 902, 930
BccI CCATC 3 cut(s) 334, 479, 845
BceAI ACGGC 2 cut(s) 140, 622
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 3 cut(s) 115, 244, 539
BcuI ACTAGT 2 cut(s) 508, 661
BfaI CTAG 5 cut(s) 192, 254, 509, 662, 897
BfmI CTRYAG 1 cut(s) 916
BglI GCCNNNNNGGC 1 cut(s) 377
BisI GCNGC 7 cut(s) 114, 128, 258, 555, 628, 916, 919
BlsI GCNGC 7 cut(s) 115, 129, 259, 556, 629, 917, 920
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 195, 369
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 2 cut(s) 422, 558
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 2 cut(s) 422, 558
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 771
BpuEI CTTGAG 3 cut(s) 652, 725, 988
Bsa29I ATCGAT 1 cut(s) 939
BsaJI CCNNGG 3 cut(s) 58, 198, 372
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 368, 398
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 142, 928, 929
Bse1I ACTGG 4 cut(s) 136, 283, 417, 553
Bse21I CCTNAGG 1 cut(s) 725
BseCI ATCGAT 1 cut(s) 939
BseDI CCNNGG 3 cut(s) 58, 198, 372
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 4 cut(s) 106, 142, 928, 929
BseMII CTCAG 3 cut(s) 230, 372, 660
BseNI ACTGG 4 cut(s) 136, 283, 417, 553
BseRI GAGGAG 3 cut(s) 133, 254, 767
BseXI GCAGC 4 cut(s) 114, 639, 902, 930
Bsh1236I CGCG 2 cut(s) 116, 132
BshFI GGCC 5 cut(s) 63, 197, 371, 575, 637
BshVI ATCGAT 1 cut(s) 939
BsiHKAI GWGCWC 2 cut(s) 107, 311
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 4 cut(s) 106, 142, 928, 929
BsmAI GTCTC 3 cut(s) 115, 244, 539
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 5 cut(s) 63, 197, 371, 575, 637
BsoBI CYCGRG 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 771
Bsp1286I GDGCHC 2 cut(s) 107, 311
Bsp143I GATC 6 cut(s) 4, 172, 188, 319, 729, 936
BspACI CCGC 7 cut(s) 14, 114, 257, 260, 554, 582, 823
BspANI GGCC 5 cut(s) 63, 197, 371, 575, 637
BspCNI CTCAG 3 cut(s) 229, 373, 661
BspDI ATCGAT 1 cut(s) 939
BspFNI CGCG 2 cut(s) 116, 132
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 920
BspPI GGATC 3 cut(s) 12, 180, 737
BspT104I TTCGAA 1 cut(s) 771
BsrI ACTGG 4 cut(s) 136, 283, 417, 553
BssECI CCNNGG 3 cut(s) 58, 198, 372
BssMI GATC 6 cut(s) 4, 172, 188, 319, 729, 936
BssT1I CCWWGG 2 cut(s) 58, 372
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 5 cut(s) 15, 390, 423, 495, 744
BstBI TTCGAA 1 cut(s) 771
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 5 cut(s) 216, 381, 669, 725, 903
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 2 cut(s) 116, 132
BstHHI GCGC 2 cut(s) 132, 271
BstKTI GATC 6 cut(s) 7, 175, 191, 322, 732, 939
BstMAI GTCTC 3 cut(s) 115, 244, 539
BstMBI GATC 6 cut(s) 4, 172, 188, 319, 729, 936
BstMWI GCNNNNNNNGC 4 cut(s) 266, 377, 560, 1018
BstNSI RCATGY 1 cut(s) 561
BstSFI CTRYAG 1 cut(s) 916
BstUI CGCG 2 cut(s) 116, 132
BstV1I GCAGC 4 cut(s) 114, 639, 902, 930
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 59
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 939
Bsu36I CCTNAGG 1 cut(s) 725
BsuRI GGCC 5 cut(s) 63, 197, 371, 575, 637
BsuTUI ATCGAT 1 cut(s) 939
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 290, 952
Cac8I GCNNGC 1 cut(s) 311
CciI TCATGA 1 cut(s) 322
CfoI GCGC 2 cut(s) 132, 271
Cfr13I GGNCC 2 cut(s) 195, 369
ClaI ATCGAT 1 cut(s) 939
Csp6I GTAC 2 cut(s) 139, 820
CviAII CATG 2 cut(s) 323, 558
CviQI GTAC 2 cut(s) 139, 820
DdeI CTNAG 5 cut(s) 216, 381, 669, 725, 903
DpnI GATC 6 cut(s) 6, 174, 190, 321, 731, 938
DpnII GATC 6 cut(s) 4, 172, 188, 319, 729, 936
Eam1104I CTCTTC 5 cut(s) 15, 390, 423, 495, 744
EarI CTCTTC 5 cut(s) 15, 390, 423, 495, 744
EciI GGCGGA 1 cut(s) 275
Eco130I CCWWGG 2 cut(s) 58, 372
Eco57I CTGAAG 2 cut(s) 768, 833
Eco81I CCTNAGG 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 58, 372
ErhI CCWWGG 2 cut(s) 58, 372
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 2 cut(s) 326, 561
FaiI YATR 7 cut(s) 209, 318, 324, 559, 614, 861, 1014
FatI CATG 2 cut(s) 322, 557
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 7 cut(s) 114, 128, 258, 555, 628, 916, 919
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 7 cut(s) 114, 128, 258, 555, 628, 916, 919
FspAI RTGCGCAY 1 cut(s) 270
FspBI CTAG 5 cut(s) 192, 254, 509, 662, 897
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 2 cut(s) 131, 270
GluI GCNGC 7 cut(s) 114, 128, 258, 555, 628, 916, 919
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 5 cut(s) 63, 197, 371, 575, 637
HapII CCGG 1 cut(s) 100
HhaI GCGC 2 cut(s) 132, 271
Hin1II CATG 2 cut(s) 326, 561
Hin6I GCGC 2 cut(s) 130, 269
HinP1I GCGC 2 cut(s) 130, 269
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 8 cut(s) 41, 82, 244, 473, 515, 590, 925, 956
HpaII CCGG 1 cut(s) 100
HphI GGTGA 4 cut(s) 289, 483, 919, 969
Hpy166II GTNNAC 3 cut(s) 25, 75, 141
Hpy188I TCNGA 5 cut(s) 38, 109, 249, 350, 850
Hpy188III TCNNGA 4 cut(s) 86, 182, 323, 1005
Hpy8I GTNNAC 3 cut(s) 25, 75, 141
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 163, 295, 703
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 288, 563, 918, 1012
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 377, 560, 1018
HpyF3I CTNAG 5 cut(s) 216, 381, 669, 725, 903
Hsp92II CATG 2 cut(s) 326, 561
HspAI GCGC 2 cut(s) 130, 269
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 6 cut(s) 4, 172, 188, 319, 729, 936
LmnI GCTCC 2 cut(s) 102, 184
Lsp1109I GCAGC 4 cut(s) 114, 639, 902, 930
LweI GCATC 1 cut(s) 280
MaeI CTAG 5 cut(s) 192, 254, 509, 662, 897
MaeIII GTNAC 2 cut(s) 947, 989
MalI GATC 6 cut(s) 6, 174, 190, 321, 731, 938
MboI GATC 6 cut(s) 4, 172, 188, 319, 729, 936
MboII GAAGA 7 cut(s) 407, 440, 512, 728, 761, 785, 946
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 107, 311
MluCI AATT 4 cut(s) 158, 419, 761, 838
MlyI GAGTC 4 cut(s) 50, 76, 524, 599
MmeI TCCRAC 2 cut(s) 276, 381
MroXI GAANNNNTTC 1 cut(s) 838
MslI CAYNNNNRTG 1 cut(s) 864
MspI CCGG 1 cut(s) 100
MvnI CGCG 2 cut(s) 116, 132
MwoI GCNNNNNNNGC 4 cut(s) 266, 377, 560, 1018
NdeII GATC 6 cut(s) 4, 172, 188, 319, 729, 936
NlaIII CATG 2 cut(s) 326, 561
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 947
NsbI TGCGCA 1 cut(s) 270
NspI RCATGY 1 cut(s) 561
NspV TTCGAA 1 cut(s) 771
PaeR7I CTCGAG 1 cut(s) 86
PagI TCATGA 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 838
PfeI GAWTC 4 cut(s) 244, 473, 925, 956
PkrI GCNGC 7 cut(s) 115, 129, 259, 556, 629, 917, 920
PleI GAGTC 4 cut(s) 49, 76, 523, 598
PpsI GAGTC 4 cut(s) 49, 76, 523, 598
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 195, 369
PstI CTGCAG 1 cut(s) 920
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 140, 821
RsaNI GTAC 2 cut(s) 139, 820
RseI CAYNNNNRTG 1 cut(s) 864
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 7 cut(s) 114, 128, 258, 555, 628, 916, 919
Sau3AI GATC 6 cut(s) 4, 172, 188, 319, 729, 936
Sau96I GGNCC 2 cut(s) 195, 369
SchI GAGTC 4 cut(s) 50, 76, 524, 599
SduI GDGCHC 2 cut(s) 107, 311
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 916
Sfr274I CTCGAG 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 771
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 4 cut(s) 86, 631, 704, 1003
SmoI CTYRAG 4 cut(s) 86, 631, 704, 1003
SpeI ACTAGT 2 cut(s) 508, 661
Sse9I AATT 4 cut(s) 158, 419, 761, 838
SsiI CCGC 7 cut(s) 14, 114, 257, 260, 554, 582, 823
SspMI CTAG 5 cut(s) 192, 254, 509, 662, 897
StyI CCWWGG 2 cut(s) 58, 372
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 6 cut(s) 24, 44, 87, 393, 771, 939
TaqII GACCGA 1 cut(s) 342
TasI AATT 4 cut(s) 158, 419, 761, 838
TatI WGTACW 1 cut(s) 138
TauI GCSGC 3 cut(s) 116, 260, 557
TfiI GAWTC 4 cut(s) 244, 473, 925, 956
TscAI CASTG 2 cut(s) 290, 952
TseFI GTSAC 1 cut(s) 947
TseI GCWGC 4 cut(s) 127, 627, 915, 918
Tsp45I GTSAC 1 cut(s) 947
TspDTI ATGAA 6 cut(s) 224, 423, 465, 465, 711, 807
TspRI CASTG 2 cut(s) 290, 952
XceI RCATGY 1 cut(s) 561
XhoI CTCGAG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 838
XspI CTAG 5 cut(s) 192, 254, 509, 662, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.