Rroxscaffold_6G00400170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000497
Physical Location & Seq
Reverse (-)
22273107 .. 22273641
535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400170.1

Sequence Viewer

Length: 435 bp
ATGGATCCTCTTCCACAAGAAGTTGACGATTACATCGGAGAGTCGATTGACCACACCCTCGGCCTCCCCGTGTCCGCACGGACTCTCGAATTGAAGCTCGGTGCTCGGAAACCGCGAAGCGGCAATTGCGCGACCGGTTTGTATGAACGCTCGGGCTTTGAGGAAGTTTGTGGAGTAGAATCGGACACTAGCGGCGAGTGTGCGCATCCGGTGAGTCGGTGTAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTTGGAAACAAGGCGGACCAAAGGGCCAAGGAGGCCGAGTTTCGGGTCCAAGAGTTGGAGGATGAACTGGGAGAATTGAGGGAAGAATTAGAGTTTTACAAGAATGAATACAAGAGGCTTTCGGTAATTCTTTCCGACTATCTTTTATTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.4

Weight (kDa)

4.6

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 334
AccII CGCG 2 cut(s) 115, 131
AciI CCGC 5 cut(s) 75, 113, 120, 192, 293
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 119, 321, 334
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 2 cut(s) 106, 245
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 3 cut(s) 61, 303, 312
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 2 cut(s) 131, 205
AspS9I GGNCC 3 cut(s) 295, 303, 325
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 2 cut(s) 295, 325
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 106, 245
BccI CCATC 1 cut(s) 268
BclI TGATCA 1 cut(s) 253
BfaI CTAG 1 cut(s) 189
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 2 cut(s) 121, 193
BlsI GCNGC 2 cut(s) 122, 194
Bme18I GGWCC 2 cut(s) 295, 325
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 3 cut(s) 295, 303, 325
BmiI GGNNCC 2 cut(s) 6, 326
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 58, 306
BsaWI WCCGGW 2 cut(s) 134, 208
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 321, 334
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 58, 306
BseGI GGATG 2 cut(s) 205, 346
BseLI CCNNNNNNNGG 3 cut(s) 119, 321, 334
BseNI ACTGG 1 cut(s) 351
Bsh1236I CGCG 2 cut(s) 115, 131
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 63, 305, 314
BshTI ACCGGT 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 106, 245
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 2 cut(s) 135, 209
BslI CCNNNNNNNGG 3 cut(s) 119, 321, 334
BsnI GGCC 3 cut(s) 63, 305, 314
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 106, 245
Bsp143I GATC 2 cut(s) 4, 253
BspACI CCGC 5 cut(s) 75, 113, 120, 192, 293
BspANI GGCC 3 cut(s) 63, 305, 314
BspFNI CGCG 2 cut(s) 115, 131
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 6, 326
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 58, 306
BssMI GATC 2 cut(s) 4, 253
BssT1I CCWWGG 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 245
BstF5I GGATG 2 cut(s) 205, 346
BstFNI CGCG 2 cut(s) 115, 131
BstHHI GCGC 2 cut(s) 131, 205
BstKTI GATC 2 cut(s) 7, 256
BstMBI GATC 2 cut(s) 4, 253
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 126, 311
BstUI CGCG 2 cut(s) 115, 131
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 63, 305, 314
BtsCI GGATG 2 cut(s) 205, 346
Cac8I GCNNGC 1 cut(s) 245
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 131, 205
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 295, 303, 325
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 1 cut(s) 257
CviJI RGCY 7 cut(s) 63, 97, 156, 269, 305, 314, 397
CviKI_1 RGCY 7 cut(s) 63, 97, 156, 269, 305, 314, 397
DpnI GATC 2 cut(s) 6, 255
DpnII GATC 2 cut(s) 4, 253
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 295, 325
Eco88I CYCGRG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 260
FaiI YATR 3 cut(s) 144, 252, 258
FatI CATG 1 cut(s) 256
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 121, 193
FokI GGATG 2 cut(s) 192, 353
Fsp4HI GCNGC 2 cut(s) 121, 193
FspAI RTGCGCAY 1 cut(s) 204
FspBI CTAG 1 cut(s) 189
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 2 cut(s) 130, 204
GluI GCNGC 2 cut(s) 121, 193
HaeIII GGCC 3 cut(s) 63, 305, 314
HapII CCGG 2 cut(s) 135, 209
HhaI GCGC 2 cut(s) 131, 205
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 2 cut(s) 129, 203
HinP1I GCGC 2 cut(s) 129, 203
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 41, 82, 179, 214
HpaII CCGG 2 cut(s) 135, 209
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 4 cut(s) 38, 108, 184, 415
Hpy188III TCNNGA 2 cut(s) 86, 257
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 311
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 2 cut(s) 129, 203
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 4, 253
LpnPI CCDG 3 cut(s) 148, 222, 332
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 221
MalI GATC 2 cut(s) 6, 255
MboI GATC 2 cut(s) 4, 253
MboII GAAGA 1 cut(s) 374
MfeI CAATTG 1 cut(s) 124
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 106, 245
MluCI AATT 5 cut(s) 89, 124, 353, 365, 405
MlyI GAGTC 3 cut(s) 50, 76, 223
MmeI TCCRAC 2 cut(s) 210, 315
MnlI CCTC 9 cut(s) 18, 68, 74, 154, 259, 304, 331, 351, 387
MspI CCGG 2 cut(s) 135, 209
MunI CAATTG 1 cut(s) 124
MvnI CGCG 2 cut(s) 115, 131
MwoI GCNNNNNNNGC 2 cut(s) 126, 311
NdeII GATC 2 cut(s) 4, 253
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 2 cut(s) 6, 326
NmeAIII GCCGAG 2 cut(s) 39, 340
NsbI TGCGCA 1 cut(s) 204
PagI TCATGA 1 cut(s) 256
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 112
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 334
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 2 cut(s) 122, 194
PleI GAGTC 3 cut(s) 49, 76, 222
PpsI GAGTC 3 cut(s) 49, 76, 222
PspN4I GGNNCC 2 cut(s) 6, 326
PspPI GGNCC 3 cut(s) 295, 303, 325
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 2 cut(s) 121, 193
Sau3AI GATC 2 cut(s) 4, 253
Sau96I GGNCC 3 cut(s) 295, 303, 325
SchI GAGTC 3 cut(s) 50, 76, 223
SduI GDGCHC 2 cut(s) 106, 245
SetI ASST 1 cut(s) 99
SfaNI GCATC 1 cut(s) 214
SfiI GGCCNNNNNGGCC 1 cut(s) 311
SinI GGWCC 2 cut(s) 295, 325
Sse9I AATT 5 cut(s) 89, 124, 353, 365, 405
SsiI CCGC 5 cut(s) 75, 113, 120, 192, 293
SspMI CTAG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 2 cut(s) 44, 87
TaqII GACCGA 1 cut(s) 276
TasI AATT 5 cut(s) 89, 124, 353, 365, 405
TauI GCSGC 2 cut(s) 123, 195
TfiI GAWTC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 159, 357, 399
TspGWI ACGGA 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 295, 325
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.