Rmu_ssc0000398.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000398.1
OG0000497
Physical Location & Seq
Forward (+)
47453 .. 48200
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000398.1_g000017.1.cds

Sequence Viewer

Length: 642 bp
atgcttaaaatttcttctcgtttacatggcagcttgaggccgtcatctcaaaaagttttgtcgctagttgctgagttgaaaacacttcagaagaataatgaaacacttgagaaggataaagaacatctaaggatcaatcttctttctgctgaagaggaggtcaaattgcttttcgaagaaaacaaagtgttagatgaagctaacaaaagattactaaagcagtaccgcaaggaaagaaacaattctggttctgatggaaagcatactgatgtatcaacgaaggtgagagaaagggagaagaatagctttgattgcatgttttactatgctcttatactttccttggcatttcatgtccatgaaattgtagtaggatctaattttatgcattctccccttttgcagtcaaacaagcgaaaatctagctctcaggtgatgagcagcggcccgattcaggggaagatcgatttcagtgaccaagaatcagcaagacaacctctctcacccttgcgttgtaactcccctaactcaagactgcataaaaagcaaggaagcttccgaaatagtctcacctctcatttgtacctttttatgtacccatcatatgggttggttggcataagattgcagattttcaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.47

Weight (kDa)

9.74

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 605
AciI CCGC 2 cut(s) 226, 444
AclWI GGATC 2 cut(s) 140, 382
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 71, 171
AfaI GTAC 3 cut(s) 224, 584, 596
AfiI CCNNNNNNNGG 3 cut(s) 454, 455, 605
AgsI TTSAA 2 cut(s) 79, 637
AluBI AGCT 5 cut(s) 33, 200, 306, 426, 555
AluI AGCT 5 cut(s) 33, 200, 306, 426, 555
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 2 cut(s) 140, 382
AoxI GGCC 2 cut(s) 38, 445
ApeKI GCWGC 2 cut(s) 30, 441
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 4 cut(s) 295, 445, 495, 562
AsuII TTCGAA 1 cut(s) 174
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BbvI GCAGC 2 cut(s) 42, 453
BccI CCATC 2 cut(s) 248, 607
BceAI ACGGC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 2 cut(s) 65, 423
BisI GCNGC 3 cut(s) 31, 442, 445
BlsI GCNGC 3 cut(s) 32, 443, 446
BmgT120I GGNCC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 3 cut(s) 55, 128, 514
Bsa29I ATCGAT 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 342
Bsc4I CCNNNNNNNGG 3 cut(s) 454, 455, 605
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 342
BseLI CCNNNNNNNGG 3 cut(s) 454, 455, 605
BseMII CTCAG 2 cut(s) 63, 443
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 42, 453
BshFI GGCC 2 cut(s) 40, 447
BshVI ATCGAT 1 cut(s) 465
BslI CCNNNNNNNGG 3 cut(s) 454, 455, 605
BsmAI GTCTC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 2 cut(s) 40, 447
Bsp119I TTCGAA 1 cut(s) 174
Bsp143I GATC 3 cut(s) 132, 374, 462
BspACI CCGC 2 cut(s) 226, 444
BspANI GGCC 2 cut(s) 40, 447
BspCNI CTCAG 2 cut(s) 64, 442
BspDI ATCGAT 1 cut(s) 465
BspPI GGATC 2 cut(s) 140, 382
BspT104I TTCGAA 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 3 cut(s) 132, 374, 462
BssT1I CCWWGG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 72, 128, 429
BstKTI GATC 3 cut(s) 135, 377, 465
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 3 cut(s) 132, 374, 462
BstMWI GCNNNNNNNGC 2 cut(s) 312, 544
BstNSI RCATGY 1 cut(s) 319
BstV1I GCAGC 2 cut(s) 42, 453
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 2 cut(s) 40, 447
BsuTUI ATCGAT 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 446
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 3 cut(s) 223, 583, 595
CviAII CATG 4 cut(s) 26, 316, 353, 359
CviJI RGCY 7 cut(s) 33, 40, 200, 306, 426, 447, 555
CviKI_1 RGCY 7 cut(s) 33, 40, 200, 306, 426, 447, 555
CviQI GTAC 3 cut(s) 223, 583, 595
DdeI CTNAG 3 cut(s) 72, 128, 429
DpnI GATC 3 cut(s) 134, 376, 464
DpnII GATC 3 cut(s) 132, 374, 462
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 342
Eco57I CTGAAG 2 cut(s) 71, 171
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 4 cut(s) 29, 319, 356, 362
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FatI CATG 4 cut(s) 25, 315, 352, 358
FauNDI CATATG 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 31, 442, 445
Fsp4HI GCNGC 3 cut(s) 31, 442, 445
FspBI CTAG 2 cut(s) 65, 423
GluI GCNGC 3 cut(s) 31, 442, 445
HaeIII GGCC 2 cut(s) 40, 447
Hin1II CATG 4 cut(s) 29, 319, 356, 362
HindIII AAGCTT 1 cut(s) 553
HinfI GANTC 2 cut(s) 451, 482
HphI GGTGA 4 cut(s) 295, 445, 495, 562
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 3 cut(s) 90, 253, 560
Hpy188III TCNNGA 1 cut(s) 531
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 106, 274
HpyCH4V TGCA 5 cut(s) 315, 388, 403, 538, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 544
HpyF3I CTNAG 3 cut(s) 72, 128, 429
Hsp92II CATG 4 cut(s) 29, 319, 356, 362
Kzo9I GATC 3 cut(s) 132, 374, 462
LpnPI CCDG 3 cut(s) 231, 416, 440
Lsp1109I GCAGC 2 cut(s) 42, 453
MaeI CTAG 2 cut(s) 65, 423
MaeIII GTNAC 2 cut(s) 473, 515
MalI GATC 3 cut(s) 134, 376, 464
MboI GATC 3 cut(s) 132, 374, 462
MboII GAAGA 7 cut(s) 6, 103, 131, 164, 188, 310, 472
MflI RGATCY 1 cut(s) 374
MluCI AATT 5 cut(s) 9, 164, 241, 363, 379
MnlI CCTC 5 cut(s) 30, 148, 151, 507, 583
Mph1103I ATGCAT 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 267, 357
MspA1I CMGCKG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 312, 544
NdeI CATATG 1 cut(s) 604
NdeII GATC 3 cut(s) 132, 374, 462
NlaIII CATG 4 cut(s) 29, 319, 356, 362
NmuCI GTSAC 1 cut(s) 473
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 174
PctI GAATGC 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 2 cut(s) 451, 482
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 3 cut(s) 32, 443, 446
PspPI GGNCC 1 cut(s) 446
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 3 cut(s) 224, 584, 596
RsaNI GTAC 3 cut(s) 223, 583, 595
RseI CAYNNNNRTG 2 cut(s) 267, 357
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 3 cut(s) 31, 442, 445
Sau3AI GATC 3 cut(s) 132, 374, 462
Sau96I GGNCC 1 cut(s) 446
SfuI TTCGAA 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 267, 357
SmlI CTYRAG 3 cut(s) 34, 107, 529
SmoI CTYRAG 3 cut(s) 34, 107, 529
Sse9I AATT 5 cut(s) 9, 164, 241, 363, 379
SsiI CCGC 2 cut(s) 226, 444
SspMI CTAG 2 cut(s) 65, 423
StyI CCWWGG 1 cut(s) 342
TaqI TCGA 2 cut(s) 174, 465
TasI AATT 5 cut(s) 9, 164, 241, 363, 379
TauI GCSGC 1 cut(s) 447
TfiI GAWTC 2 cut(s) 451, 482
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 2 cut(s) 30, 441
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 4 cut(s) 114, 210, 341, 375
TspRI CASTG 1 cut(s) 478
Van91I CCANNNNNTGG 1 cut(s) 605
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 2 cut(s) 65, 423
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.