MD08G1189700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000497
Physical Location & Seq
Reverse (-)
23928427 .. 23930258
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1189700.v1.1.491

Sequence Viewer

Length: 603 bp
ATGAATGCACAAGCTTTGAGGAAGTTCGTTGAGGAGAATCAGAGATTGGCATCGGAGTGTGCGCATCTGGTGACTCAATGCAACAAGTGGGAGAGGGAGTGCTCGCTCTACGATCATGACCAAGAGGCTTTGATGGATTTTGGGAACGAGGCTGATCAGCGTGCCAAGGAGGCCCAGATTCGTGTTTTCGGTTTCCAGAATGTTGATTCATCTGCTGAAAACACAGCAATTGAAGACAAACAACTGGATTCTGTTTTGGCAACATTGATCAGTAAAGATGAAGCTGTGTCTGCACGTGCGTTTCTGGAGGCCAACAAAGGCAATGAGTCATGTGCAAGATTGCTAAAAATGTGGAACTGCTTGAAGCCGTCCTCTCAAAAACTTCTATCACTAGTTGCTGAGGTAAAAACACTTGAGAAGGATAAGGAACATCTTAGGATCAGTCTTCGTACGGCTGAAGAGGAGATTAAATTGCTTTTTGAAGAAAACAAAGTCCTAGATGTGGAGAACAAAAGATTACTGAGGCTGAAGCCTATATGCACAAAGTTTTGTGAATTGACCCCTAAGCGTTTTGGGGAGGAATTACTCCTCCTTCTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.97

Weight (kDa)

5.35

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 63
AclWI GGATC 1 cut(s) 446
AcuI CTGAAG 2 cut(s) 477, 548
AcvI CACGTG 1 cut(s) 296
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 1 cut(s) 502
AgsI TTSAA 3 cut(s) 233, 364, 482
AhlI ACTAGT 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 2 cut(s) 14, 284
AluI AGCT 2 cut(s) 14, 284
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 2 cut(s) 171, 309
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 596
BbrPI CACGTG 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 240, 437
Bbv12I GWGCWC 1 cut(s) 104
BbvCI CCTCAGC 1 cut(s) 399
BccI CCATC 1 cut(s) 127
BceAI ACGGC 2 cut(s) 352, 468
BclI TGATCA 2 cut(s) 154, 267
BcuI ACTAGT 1 cut(s) 391
BfaI CTAG 2 cut(s) 392, 497
BglI GCCNNNNNGGC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 172
BmsI GCATC 2 cut(s) 59, 73
BpiI GAAGAC 2 cut(s) 240, 437
BpmI CTGGAG 1 cut(s) 326
Bpu10I CCTNAGC 2 cut(s) 399, 564
BpuEI CTTGAG 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 390, 512
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 3 cut(s) 47, 476, 578
BsgI GTGCAG 1 cut(s) 276
BshFI GGCC 2 cut(s) 173, 311
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 596
BsiWI CGTACG 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 502
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 173, 311
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 4 cut(s) 112, 154, 267, 438
BspANI GGCC 2 cut(s) 173, 311
BspCNI CTCAG 2 cut(s) 391, 513
BspHI TCATGA 1 cut(s) 115
BspPI GGATC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 4 cut(s) 112, 154, 267, 438
BssT1I CCWWGG 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 104, 162
BstDEI CTNAG 4 cut(s) 399, 434, 521, 564
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 4 cut(s) 115, 157, 270, 441
BstMBI GATC 4 cut(s) 112, 154, 267, 438
BstMWI GCNNNNNNNGC 2 cut(s) 170, 290
BstV2I GAAGAC 2 cut(s) 240, 437
BsuRI GGCC 2 cut(s) 173, 311
Cac8I GCNNGC 2 cut(s) 104, 162
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 450
CviAII CATG 2 cut(s) 116, 330
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 4 cut(s) 399, 434, 521, 564
DpnI GATC 4 cut(s) 114, 156, 269, 440
DpnII GATC 4 cut(s) 112, 154, 267, 438
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 165
Eco57I CTGAAG 2 cut(s) 477, 548
Eco72I CACGTG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 596
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 119, 333
FaiI YATR 4 cut(s) 117, 331, 536, 538
FatI CATG 2 cut(s) 115, 329
FbaI TGATCA 2 cut(s) 154, 267
FspAI RTGCGCAY 1 cut(s) 63
FspBI CTAG 2 cut(s) 392, 497
FspI TGCGCA 1 cut(s) 63
GlaI GCGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 2 cut(s) 173, 311
HhaI GCGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 119, 333
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 6 cut(s) 37, 73, 178, 206, 248, 326
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 42, 55
Hpy188III TCNNGA 4 cut(s) 116, 196, 305, 596
HpyAV CCTTC 2 cut(s) 412, 602
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 5 cut(s) 8, 81, 293, 335, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 290
HpyF3I CTNAG 4 cut(s) 399, 434, 521, 564
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 2 cut(s) 119, 333
HspAI GCGC 1 cut(s) 62
Ksp22I TGATCA 2 cut(s) 154, 267
Kzo9I GATC 4 cut(s) 112, 154, 267, 438
LpnPI CCDG 5 cut(s) 53, 188, 209, 230, 290
LweI GCATC 2 cut(s) 59, 73
MaeI CTAG 2 cut(s) 392, 497
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 70
MalI GATC 4 cut(s) 114, 156, 269, 440
MboI GATC 4 cut(s) 112, 154, 267, 438
MboII GAAGA 4 cut(s) 245, 437, 470, 494
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 228, 470, 554, 581
MlyI GAGTC 2 cut(s) 67, 335
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 55
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 170, 290
NdeII GATC 4 cut(s) 112, 154, 267, 438
NlaIII CATG 2 cut(s) 119, 333
NmuCI GTSAC 1 cut(s) 70
NsbI TGCGCA 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 596
PagI TCATGA 1 cut(s) 115
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 4 cut(s) 37, 178, 206, 248
Pfl23II CGTACG 1 cut(s) 449
PleI GAGTC 2 cut(s) 67, 334
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
PpsI GAGTC 2 cut(s) 67, 334
Ppu21I YACGTR 1 cut(s) 296
PspCI CACGTG 1 cut(s) 296
PspLI CGTACG 1 cut(s) 449
PspPI GGNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 1 cut(s) 55
SaqAI TTAA 1 cut(s) 468
Sau3AI GATC 4 cut(s) 112, 154, 267, 438
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 2 cut(s) 67, 335
SduI GDGCHC 1 cut(s) 104
SetI ASST 4 cut(s) 16, 286, 298, 405
SfaNI GCATC 2 cut(s) 59, 73
Sfr274I CTCGAG 1 cut(s) 596
SlaI CTCGAG 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 55
SmlI CTYRAG 2 cut(s) 413, 596
SmoI CTYRAG 2 cut(s) 413, 596
SpeI ACTAGT 1 cut(s) 391
Sse9I AATT 4 cut(s) 228, 470, 554, 581
SspMI CTAG 2 cut(s) 392, 497
StyI CCWWGG 1 cut(s) 165
TaiI ACGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 597
TasI AATT 4 cut(s) 228, 470, 554, 581
TfiI GAWTC 4 cut(s) 37, 178, 206, 248
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 17, 198, 294
XhoI CTCGAG 1 cut(s) 596
XspI CTAG 2 cut(s) 392, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.