Rh5BG308100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000497
Physical Location & Seq
Forward (+)
40184171 .. 40184696
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG308100.1

Sequence Viewer

Length: 333 bp
ATGTTGAAGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATCGACCAAAGATGAGACTGGGGCGGCATGTGCATTTTTGGAGCCAATAGCTGAAATGGGTCATGTCAAAGATGGCAGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTTGAGAAGGATAAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGTTGAGAAGAGCAGAACGTTTTCTAATATTGATTCTTCCACTTCCATGTCAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.13

Weight (kDa)

5.08

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclI AACGTT 1 cut(s) 292
AclWI GGATC 1 cut(s) 257
AcuI CTGAAG 3 cut(s) 45, 188, 288
AgsI TTSAA 3 cut(s) 7, 41, 196
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 2 cut(s) 122, 150
AluI AGCT 2 cut(s) 122, 150
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 257
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 24
BbvI GCAGC 1 cut(s) 159
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 80
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 182
BisI GCNGC 2 cut(s) 96, 148
BlsI GCNGC 2 cut(s) 97, 149
BmiI GGNNCC 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 172, 245
Bse1I ACTGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 1 cut(s) 257
BspQI GCTCTTC 1 cut(s) 277
BsrI ACTGG 1 cut(s) 94
BssMI GATC 1 cut(s) 249
Bst6I CTCTTC 3 cut(s) 36, 264, 277
BstDEI CTNAG 2 cut(s) 189, 245
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 157
CviAII CATG 3 cut(s) 99, 134, 321
CviJI RGCY 5 cut(s) 30, 115, 122, 150, 157
CviKI_1 RGCY 5 cut(s) 30, 115, 122, 150, 157
DdeI CTNAG 2 cut(s) 189, 245
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 36, 264, 277
EarI CTCTTC 3 cut(s) 36, 264, 277
Eco57I CTGAAG 3 cut(s) 45, 188, 288
FaeI CATG 3 cut(s) 102, 137, 324
FaiI YATR 3 cut(s) 100, 135, 322
FatI CATG 3 cut(s) 98, 133, 320
Fnu4HI GCNGC 2 cut(s) 96, 148
Fsp4HI GCNGC 2 cut(s) 96, 148
FspBI CTAG 2 cut(s) 50, 182
GluI GCNGC 2 cut(s) 96, 148
HaeIII GGCC 1 cut(s) 157
Hin1II CATG 3 cut(s) 102, 137, 324
HinfI GANTC 3 cut(s) 14, 56, 307
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 20, 223
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 189, 245
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 3 cut(s) 102, 137, 324
Kzo9I GATC 1 cut(s) 249
LguI GCTCTTC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 2 cut(s) 48, 75
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 2 cut(s) 50, 182
MaeII ACGT 1 cut(s) 292
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 6 cut(s) 53, 220, 248, 281, 294, 302
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 2 cut(s) 147, 265
MroXI GAANNNNTTC 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 249
NlaIII CATG 3 cut(s) 102, 137, 324
NlaIV GGNNCC 1 cut(s) 114
NspI RCATGY 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 14, 307
PkrI GCNGC 2 cut(s) 97, 149
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp1406I AACGTT 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 277
SatI GCNGC 2 cut(s) 96, 148
Sau3AI GATC 1 cut(s) 249
SchI GAGTC 1 cut(s) 65
SetI ASST 6 cut(s) 12, 37, 124, 152, 295, 332
SgeI CNNG 8 cut(s) 47, 62, 102, 111, 146, 163, 194, 236
SmiMI CAYNNNNRTG 1 cut(s) 319
SmlI CTYRAG 2 cut(s) 151, 224
SmoI CTYRAG 2 cut(s) 151, 224
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 1 cut(s) 95
SspI AATATT 1 cut(s) 303
SspMI CTAG 2 cut(s) 50, 182
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 74
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 2 cut(s) 14, 307
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 6, 231
XceI RCATGY 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 50, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.