Rroxscaffold_153G00436700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000153
OG0000497
Physical Location & Seq
Reverse (-)
255641 .. 256609
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_153G00436700.1

Sequence Viewer

Length: 654 bp
ATGTTGAACGTTGATTCATCTGTTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTTTGTTTTAGCAACATCGACCAAAGATGAGACTGGGACGGCATGTGCATGTCAAAGGTTGCTAAATATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTTGAGAAGGATAAAGAACACCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAACAATTCTGGTTATGATGGAAAGCATACTAATGTATCAACGAAGGTGAAAGAAAGGGAGAAGAATAGCTTTGATTGCATGTTTTATTATGCTCTTATACTTTCCTTGGCATTTCATGTCCATGAAATTGTAGTAGGATCTAATTTTATGCATTCTCCCCTTTTGCAGTCAAACAAGCAAAAATCTAGCTCTAAGGTGACGAGCAGCAGCCCGATTCAGGGGAAGATCGATTTCAGTGACCAAGAATCAGCAAGACAACCTCTCTCACCCTTGCGTTGTAACTCCCCTAACTCAAGACTGCATAAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.64

Weight (kDa)

8.79

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 328
AclI AACGTT 1 cut(s) 9
AclWI GGATC 2 cut(s) 242, 484
AcuI CTGAAG 2 cut(s) 173, 273
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 556, 557
AgsI TTSAA 4 cut(s) 7, 26, 41, 181
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 3 cut(s) 302, 408, 528
AluI AGCT 3 cut(s) 302, 408, 528
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 242, 484
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 543, 546
Asp700I GAANNNNTTC 1 cut(s) 343
AsuHPI GGTGA 4 cut(s) 24, 397, 547, 597
AsuII TTCGAA 1 cut(s) 276
AxyI CCTNAGG 1 cut(s) 230
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BbvI GCAGC 2 cut(s) 555, 558
BccI CCATC 1 cut(s) 350
BceAI ACGGC 2 cut(s) 111, 127
BcoDI GTCTC 1 cut(s) 80
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 3 cut(s) 50, 167, 525
BisI GCNGC 2 cut(s) 544, 547
BlsI GCNGC 2 cut(s) 545, 548
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 3 cut(s) 157, 230, 616
Bsa29I ATCGAT 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 444
Bsc4I CCNNNNNNNGG 2 cut(s) 556, 557
Bse1I ACTGG 1 cut(s) 94
Bse21I CCTNAGG 1 cut(s) 230
BseCI ATCGAT 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 556, 557
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 555, 558
BshFI GGCC 1 cut(s) 142
BshVI ATCGAT 1 cut(s) 567
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 556, 557
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 276
Bsp143I GATC 3 cut(s) 234, 476, 564
BspACI CCGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 567
BspPI GGATC 2 cut(s) 242, 484
BspT104I TTCGAA 1 cut(s) 276
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 3 cut(s) 234, 476, 564
BssT1I CCWWGG 1 cut(s) 444
Bst6I CTCTTC 2 cut(s) 36, 249
BstBI TTCGAA 1 cut(s) 276
BstDEI CTNAG 3 cut(s) 174, 230, 531
BstKTI GATC 3 cut(s) 237, 479, 567
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 234, 476, 564
BstMWI GCNNNNNNNGC 2 cut(s) 414, 646
BstNSI RCATGY 3 cut(s) 102, 108, 421
BstV1I GCAGC 2 cut(s) 555, 558
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
Bsu15I ATCGAT 1 cut(s) 567
Bsu36I CCTNAGG 1 cut(s) 230
BsuRI GGCC 1 cut(s) 142
BsuTUI ATCGAT 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 580
ClaI ATCGAT 1 cut(s) 567
Csp6I GTAC 1 cut(s) 325
CviAII CATG 5 cut(s) 99, 105, 418, 455, 461
CviJI RGCY 7 cut(s) 30, 135, 142, 302, 408, 528, 549
CviKI_1 RGCY 7 cut(s) 30, 135, 142, 302, 408, 528, 549
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 174, 230, 531
DpnI GATC 3 cut(s) 236, 478, 566
DpnII GATC 3 cut(s) 234, 476, 564
Eam1104I CTCTTC 2 cut(s) 36, 249
EarI CTCTTC 2 cut(s) 36, 249
Eco130I CCWWGG 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 173, 273
Eco81I CCTNAGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 5 cut(s) 102, 108, 421, 458, 464
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 1 cut(s) 106
FatI CATG 5 cut(s) 98, 104, 417, 454, 460
Fnu4HI GCNGC 2 cut(s) 544, 547
Fsp4HI GCNGC 2 cut(s) 544, 547
FspBI CTAG 3 cut(s) 50, 167, 525
GluI GCNGC 2 cut(s) 544, 547
HaeIII GGCC 1 cut(s) 142
Hin1II CATG 5 cut(s) 102, 108, 421, 458, 464
HinfI GANTC 3 cut(s) 14, 553, 584
HphI GGTGA 4 cut(s) 24, 397, 547, 597
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 633
HpyAV CCTTC 3 cut(s) 20, 208, 376
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 5 cut(s) 104, 417, 490, 505, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 646
HpyF3I CTNAG 3 cut(s) 174, 230, 531
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 5 cut(s) 102, 108, 421, 458, 464
Kzo9I GATC 3 cut(s) 234, 476, 564
LpnPI CCDG 4 cut(s) 48, 75, 333, 542
Lsp1109I GCAGC 2 cut(s) 555, 558
MaeI CTAG 3 cut(s) 50, 167, 525
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 3 cut(s) 535, 575, 617
MalI GATC 3 cut(s) 236, 478, 566
MboI GATC 3 cut(s) 234, 476, 564
MboII GAAGA 7 cut(s) 53, 205, 233, 266, 290, 412, 574
MflI RGATCY 1 cut(s) 476
MluCI AATT 4 cut(s) 266, 343, 465, 481
MnlI CCTC 4 cut(s) 132, 250, 253, 609
Mph1103I ATGCAT 1 cut(s) 492
MroXI GAANNNNTTC 1 cut(s) 343
MslI CAYNNNNRTG 3 cut(s) 103, 369, 459
Mva1269I GAATGC 1 cut(s) 490
MwoI GCNNNNNNNGC 2 cut(s) 414, 646
NdeII GATC 3 cut(s) 234, 476, 564
NlaIII CATG 5 cut(s) 102, 108, 421, 458, 464
NmuCI GTSAC 2 cut(s) 535, 575
NsiI ATGCAT 1 cut(s) 492
NspI RCATGY 3 cut(s) 102, 108, 421
NspV TTCGAA 1 cut(s) 276
PctI GAATGC 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 14, 553, 584
PkrI GCNGC 2 cut(s) 545, 548
Psp1406I AACGTT 1 cut(s) 9
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 3 cut(s) 103, 369, 459
SatI GCNGC 2 cut(s) 544, 547
Sau3AI GATC 3 cut(s) 234, 476, 564
SfuI TTCGAA 1 cut(s) 276
SmiMI CAYNNNNRTG 3 cut(s) 103, 369, 459
SmlI CTYRAG 3 cut(s) 136, 209, 631
SmoI CTYRAG 3 cut(s) 136, 209, 631
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 4 cut(s) 266, 343, 465, 481
SsiI CCGC 1 cut(s) 328
SspMI CTAG 3 cut(s) 50, 167, 525
StyI CCWWGG 1 cut(s) 444
TaiI ACGT 1 cut(s) 12
TaqI TCGA 3 cut(s) 74, 276, 567
TasI AATT 4 cut(s) 266, 343, 465, 481
TfiI GAWTC 3 cut(s) 14, 553, 584
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 535, 575
TseI GCWGC 2 cut(s) 543, 546
Tsp45I GTSAC 2 cut(s) 535, 575
TspDTI ATGAA 5 cut(s) 6, 216, 312, 443, 477
TspRI CASTG 1 cut(s) 580
XceI RCATGY 3 cut(s) 102, 108, 421
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 3 cut(s) 50, 167, 525
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.