Rh5BG308000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000497
Physical Location & Seq
Forward (+)
40181993 .. 40182310
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG308000.1

Sequence Viewer

Length: 318 bp
ATGGATCCTCTTCCGCAAGAAGTCGGCGATTACATCAGAGAGTCGATTGAACACACCCTCGGCCTCCCCGTGTCCGCACAGATTCTCGAATTGAAGCTCCGGTGCTCGGAAGCCGCGAAGCGACGGCTGCGCGAGCAGTACACGGTTCTACTCGCCAAATTGAAGGAGAAGGATCAAGCTCTGGACCGATTTGGTTGGGTTTCTTATGTGTTTTTGGTTTCAGGCCGAGGCTTGTATGAACGCTCAGGCTTTAAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGGTGAGTCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

5.87

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 298
AccII CGCG 2 cut(s) 116, 132
AciI CCGC 4 cut(s) 14, 75, 114, 285
AclWI GGATC 2 cut(s) 12, 180
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 50, 94, 163
AluBI AGCT 2 cut(s) 97, 179
AluI AGCT 2 cut(s) 97, 179
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 2 cut(s) 12, 180
AoxI GGCC 2 cut(s) 61, 223
ApeKI GCWGC 1 cut(s) 127
AspLEI GCGC 2 cut(s) 132, 299
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 184
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 282
BisI GCNGC 3 cut(s) 114, 128, 286
BlsI GCNGC 3 cut(s) 115, 129, 287
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 58, 226
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 58, 226
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 2 cut(s) 116, 132
BshFI GGCC 2 cut(s) 63, 225
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 2 cut(s) 63, 225
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 4, 172
BspACI CCGC 4 cut(s) 14, 75, 114, 285
BspANI GGCC 2 cut(s) 63, 225
BspCNI CTCAG 1 cut(s) 257
BspFNI CGCG 2 cut(s) 116, 132
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 180
BssECI CCNNGG 2 cut(s) 58, 226
BssMI GATC 2 cut(s) 4, 172
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 244
BstFNI CGCG 2 cut(s) 116, 132
BstHHI GCGC 2 cut(s) 132, 299
BstKTI GATC 2 cut(s) 7, 175
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 2 cut(s) 4, 172
BstMWI GCNNNNNNNGC 3 cut(s) 127, 133, 294
BstUI CGCG 2 cut(s) 116, 132
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 63, 225
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 2 cut(s) 132, 299
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 139
CviJI RGCY 8 cut(s) 63, 97, 113, 127, 179, 225, 231, 249
CviKI_1 RGCY 8 cut(s) 63, 97, 113, 127, 179, 225, 231, 249
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 244
DpnI GATC 2 cut(s) 6, 174
DpnII GATC 2 cut(s) 4, 172
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 184
FaiI YATR 2 cut(s) 207, 237
Fnu4HI GCNGC 3 cut(s) 114, 128, 286
Fsp4HI GCNGC 3 cut(s) 114, 128, 286
FspAI RTGCGCAY 1 cut(s) 298
FspBI CTAG 1 cut(s) 282
FspI TGCGCA 1 cut(s) 298
GlaI GCGC 2 cut(s) 131, 298
GluI GCNGC 3 cut(s) 114, 128, 286
HaeIII GGCC 2 cut(s) 63, 225
HapII CCGG 1 cut(s) 100
HhaI GCGC 2 cut(s) 132, 299
Hin6I GCGC 2 cut(s) 130, 297
HinP1I GCGC 2 cut(s) 130, 297
HinfI GANTC 4 cut(s) 41, 82, 272, 308
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 3 cut(s) 38, 109, 277
Hpy188III TCNNGA 2 cut(s) 86, 182
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 157, 163
HpyCH4III ACNGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 133, 294
HpyF3I CTNAG 1 cut(s) 244
HspAI GCGC 2 cut(s) 130, 297
Kzo9I GATC 2 cut(s) 4, 172
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 5 cut(s) 113, 167, 207, 231, 288
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 308
MaeI CTAG 1 cut(s) 282
MalI GATC 2 cut(s) 6, 174
MboI GATC 2 cut(s) 4, 172
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 2 cut(s) 89, 158
MlyI GAGTC 2 cut(s) 50, 317
MnlI CCTC 5 cut(s) 18, 68, 74, 221, 260
MseI TTAA 1 cut(s) 252
MspI CCGG 1 cut(s) 100
MvnI CGCG 2 cut(s) 116, 132
MwoI GCNNNNNNNGC 3 cut(s) 127, 133, 294
NdeII GATC 2 cut(s) 4, 172
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 39, 251
NsbI TGCGCA 1 cut(s) 298
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 113
PfeI GAWTC 2 cut(s) 82, 272
PkrI GCNGC 3 cut(s) 115, 129, 287
PleI GAGTC 2 cut(s) 49, 316
PpsI GAGTC 2 cut(s) 49, 316
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 114, 128, 286
Sau3AI GATC 2 cut(s) 4, 172
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 2 cut(s) 50, 317
SduI GDGCHC 1 cut(s) 107
SetI ASST 2 cut(s) 99, 181
SfaNI GCATC 1 cut(s) 308
SinI GGWCC 1 cut(s) 184
Sse9I AATT 2 cut(s) 89, 158
SsiI CCGC 4 cut(s) 14, 75, 114, 285
SspMI CTAG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 44, 87
TaqII GACCGA 1 cut(s) 201
TasI AATT 2 cut(s) 89, 158
TatI WGTACW 1 cut(s) 138
TauI GCSGC 2 cut(s) 116, 288
TfiI GAWTC 2 cut(s) 82, 272
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 318
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 184
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.