Rh5CG335000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000497
Physical Location & Seq
Forward (+)
37952770 .. 37954628
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG335000.1

Sequence Viewer

Length: 162 bp
ATGAATACGAGAGGCTTTCGGCTGATGAATATTTCTATGTTGAAGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATCGACCAAAGATGAGACTGGGGCGGCATGTGCATTTTTGGAGGCCAATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.64

Weight (kDa)

4.6

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 81
AgsI TTSAA 2 cut(s) 43, 77
AhlI ACTAGT 1 cut(s) 85
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 130
BshFI GGCC 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 152
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 152
CviAII CATG 1 cut(s) 135
CviJI RGCY 5 cut(s) 15, 22, 66, 152, 159
CviKI_1 RGCY 5 cut(s) 15, 22, 66, 152, 159
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 81
FaeI CATG 1 cut(s) 138
FaiI YATR 2 cut(s) 38, 136
FatI CATG 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 1 cut(s) 138
HinfI GANTC 2 cut(s) 50, 92
HphI GGTGA 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 37, 56
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 138
LpnPI CCDG 2 cut(s) 84, 111
MaeI CTAG 1 cut(s) 86
MboII GAAGA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 5, 142
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 138
NspI RCATGY 1 cut(s) 138
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
SatI GCNGC 1 cut(s) 132
SchI GAGTC 1 cut(s) 101
SetI ASST 3 cut(s) 48, 73, 161
SgeI CNNG 5 cut(s) 21, 83, 98, 138, 147
SpeI ACTAGT 1 cut(s) 85
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 86
TaqI TCGA 1 cut(s) 110
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 17, 41, 42
XceI RCATGY 1 cut(s) 138
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.