Rorug05G0219900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000497
Physical Location & Seq
Reverse (-)
22669782 .. 22671884
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0219900.1

Sequence Viewer

Length: 561 bp
ATGATAGAAGAATGCATCTATATCCAATTCGATGGAACTATTACCAGGGATAAATTTGATCAGTTGAACTGGGATTTATATGACCAGTGTGTCAAGCTAGTTGACAAGTGTTTAGATGATGCTGCAATGGACGCAACTAGTGTCTCGGATGTGTTGCTGCTTGGCTGTTCCTCAAAGGTCCCCATGCTGCAGGAACTTGTGCGAGTGTACCTTAGAGTTAGAGGGATTCAAGTGAGTATCAACAGAGAAGAAAAAGAGCCGGTGGTTGCTTATGGTGCATCTCTTGTAGGTGCAATGTTGTGCACAGCTAGTATAAAAGAGGTGCAGTCTCTATCGATTTGTGATGCAACTACACTATCCGTGACTCATGTGACATTCAGCCCGATAATACAACTACTTGCCCTACTATCCCCAAAACAAAAAAAGTTGGAGGTCCTGAATAAGAAGACTGTTATTCCAAGGAAGACTCCCATTCCAGCAATTAACAAGAGTACAAGACAGTTATTAACTTTTGGTTCTCTGAAGAGGTCACAAGAAAAGAAGCATGATGACTCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.77

Weight (kDa)

8.18

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 122 4.9e-18 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 542
AfaI GTAC 2 cut(s) 209, 493
AgsI TTSAA 2 cut(s) 67, 230
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 2 cut(s) 97, 308
AluI AGCT 2 cut(s) 97, 308
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 148, 333
Alw44I GTGCAC 1 cut(s) 301
ApaLI GTGCAC 1 cut(s) 301
ApeKI GCWGC 3 cut(s) 122, 157, 187
ApoI RAATTY 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 178, 433
AvaII GGWCC 2 cut(s) 178, 433
BaeGI GKGCMC 1 cut(s) 305
BbsI GAAGAC 2 cut(s) 452, 470
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 109, 144, 174
BccI CCATC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 46
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 148, 333
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 3 cut(s) 98, 138, 309
BfmI CTRYAG 1 cut(s) 188
BisI GCNGC 3 cut(s) 123, 158, 188
BlsI GCNGC 3 cut(s) 124, 159, 189
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 2 cut(s) 178, 433
BmgT120I GGNCC 2 cut(s) 178, 433
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 4 cut(s) 24, 109, 287, 334
BmuI ACTGGG 1 cut(s) 79
BpiI GAAGAC 2 cut(s) 452, 470
Bsa29I ATCGAT 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 45, 458
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 74, 85
Bse3DI GCAATG 2 cut(s) 132, 300
BseBI CCWGG 1 cut(s) 46
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 45, 458
BseGI GGATG 1 cut(s) 154
BseMI GCAATG 2 cut(s) 132, 300
BseNI ACTGG 2 cut(s) 74, 85
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 3 cut(s) 109, 144, 174
BsgI GTGCAG 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 148, 333
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 192
BsrDI GCAATG 2 cut(s) 132, 300
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 2 cut(s) 74, 85
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 45, 458
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 451, 501
Bst6I CTCTTC 1 cut(s) 518
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 2 cut(s) 148, 333
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 131, 275
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 188
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 109, 144, 174
BstV2I GAAGAC 2 cut(s) 452, 470
BstXI CCANNNNNNTGG 1 cut(s) 32
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 178, 433
ClaI ATCGAT 1 cut(s) 335
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 208, 492
CviAII CATG 3 cut(s) 184, 368, 545
CviJI RGCY 5 cut(s) 97, 165, 259, 308, 381
CviKI_1 RGCY 5 cut(s) 97, 165, 259, 308, 381
CviQI GTAC 2 cut(s) 208, 492
DdeI CTNAG 1 cut(s) 212
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 458
Eco47I GGWCC 2 cut(s) 178, 433
Eco57I CTGAAG 1 cut(s) 542
EcoO109I RGGNCCY 2 cut(s) 178, 433
EcoRII CCWGG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 3 cut(s) 187, 371, 548
FaiI YATR 9 cut(s) 21, 79, 81, 185, 273, 314, 369, 546, 559
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 183, 367, 544
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 123, 158, 188
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 123, 158, 188
FspBI CTAG 3 cut(s) 98, 138, 309
GluI GCNGC 3 cut(s) 123, 158, 188
HapII CCGG 1 cut(s) 260
HgaI GACGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 187, 371, 548
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 226, 364, 466, 551
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 3 cut(s) 103, 208, 303
Hpy188I TCNGA 2 cut(s) 148, 522
Hpy188III TCNNGA 1 cut(s) 436
Hpy8I GTNNAC 3 cut(s) 103, 208, 303
HpyCH4III ACNGT 2 cut(s) 451, 501
HpyCH4V TGCA 8 cut(s) 15, 125, 190, 278, 293, 303, 325, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 275
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 3 cut(s) 187, 371, 548
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 8 cut(s) 31, 55, 58, 98, 176, 273, 449, 489
Lsp1109I GCAGC 3 cut(s) 109, 144, 174
LweI GCATC 4 cut(s) 24, 109, 287, 334
MaeI CTAG 3 cut(s) 98, 138, 309
MaeIII GTNAC 3 cut(s) 361, 370, 528
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 5 cut(s) 20, 260, 457, 475, 535
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 3 cut(s) 26, 53, 480
MlyI GAGTC 3 cut(s) 358, 460, 545
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 5 cut(s) 181, 215, 313, 424, 519
Mph1103I ATGCAT 1 cut(s) 17
MseI TTAA 2 cut(s) 483, 506
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 46
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 131, 275
NdeII GATC 1 cut(s) 58
NlaIII CATG 3 cut(s) 187, 371, 548
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 3 cut(s) 361, 370, 528
NsiI ATGCAT 1 cut(s) 17
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 3 cut(s) 124, 159, 189
PleI GAGTC 3 cut(s) 358, 460, 545
PpsI GAGTC 3 cut(s) 358, 460, 545
PpuMI RGGWCCY 2 cut(s) 178, 433
Psp5II RGGWCCY 2 cut(s) 178, 433
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 2 cut(s) 178, 433
PspPPI RGGWCCY 2 cut(s) 178, 433
PstI CTGCAG 1 cut(s) 192
RsaI GTAC 2 cut(s) 209, 493
RsaNI GTAC 2 cut(s) 208, 492
SaqAI TTAA 2 cut(s) 483, 506
SatI GCNGC 3 cut(s) 123, 158, 188
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 2 cut(s) 178, 433
SchI GAGTC 3 cut(s) 358, 460, 545
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 305
SetI ASST 8 cut(s) 99, 180, 213, 292, 310, 324, 435, 530
SfaNI GCATC 4 cut(s) 24, 109, 287, 334
SfcI CTRYAG 1 cut(s) 188
SinI GGWCC 2 cut(s) 178, 433
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 3 cut(s) 26, 53, 480
SspMI CTAG 3 cut(s) 98, 138, 309
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 2 cut(s) 451, 501
TaqI TCGA 2 cut(s) 30, 335
TasI AATT 3 cut(s) 26, 53, 480
TatI WGTACW 1 cut(s) 491
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 483, 506
Tru9I TTAA 2 cut(s) 483, 506
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 3 cut(s) 361, 370, 528
TseI GCWGC 3 cut(s) 122, 157, 187
Tsp45I GTSAC 3 cut(s) 361, 370, 528
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 1 cut(s) 92
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 178, 433
XapI RAATTY 1 cut(s) 53
XspI CTAG 3 cut(s) 98, 138, 309
Zsp2I ATGCAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.