Rw5G025810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000497
Physical Location & Seq
Forward (+)
36917036 .. 36920093
3058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025810.1

Sequence Viewer

Length: 888 bp
ATGGATCCTCTTCCGCAAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTCGGCCTCCCCGTGTCCGCACAGACTCTCGAATTGAAGCTCCGCTGCTCGGAAGCCGCGAAGCGACGGCTGCGCGACCAGTACACGGTTCTACTCGCCAAATTGAAGGAGAAGGATCAAGCTCTGGACCGATCTGGTTGGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTGGCTCTGTGATCATGACCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTTCGGGTCCAAGAGTTGGAGGATGAATTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATTGACCAAAGATGAGACTGGGGCGGCATGTTCATGTCAAAGGTTGCTAAATATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTGGAGAAGGATAAAGAACATCAAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACATAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGGTGATGAGCAGCAGCCTGATTCAGGGGAAGATCGATTTGAGTGACCAAGAATCAGCAAGACAACCTCTCTCACCCTTGGCGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.7

Weight (kDa)

5.14

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 379
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 116, 132
AciI CCGC 7 cut(s) 14, 75, 100, 114, 236, 512, 745
AclWI GGATC 3 cut(s) 12, 180, 659
AcuI CTGAAG 3 cut(s) 462, 590, 690
AfaI GTAC 2 cut(s) 140, 743
AfiI CCNNNNNNNGG 4 cut(s) 106, 142, 379, 823
AgsI TTSAA 5 cut(s) 94, 163, 394, 458, 598
AhlI ACTAGT 1 cut(s) 466
AluBI AGCT 3 cut(s) 97, 179, 719
AluI AGCT 3 cut(s) 97, 179, 719
Alw26I GTCTC 2 cut(s) 223, 497
AlwI GGATC 3 cut(s) 12, 180, 659
AoxI GGCC 3 cut(s) 61, 348, 557
ApeKI GCWGC 4 cut(s) 102, 127, 810, 813
Asp700I GAANNNNTTC 1 cut(s) 760
AspLEI GCGC 2 cut(s) 132, 250
AspS9I GGNCC 3 cut(s) 184, 348, 370
AsuHPI GGTGA 4 cut(s) 268, 441, 814, 864
AsuII TTCGAA 1 cut(s) 693
AvaII GGWCC 2 cut(s) 184, 370
BaeI ACNNNNGTAYC 2 cut(s) 774, 807
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 4 cut(s) 89, 114, 822, 825
BccI CCATC 2 cut(s) 313, 767
BceAI ACGGC 2 cut(s) 140, 544
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 223, 497
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 3 cut(s) 233, 467, 584
BglI GCCNNNNNGGC 1 cut(s) 356
BisI GCNGC 7 cut(s) 103, 114, 128, 237, 513, 811, 814
BlsI GCNGC 7 cut(s) 104, 115, 129, 238, 514, 812, 815
Bme18I GGWCC 2 cut(s) 184, 370
BmgT120I GGNCC 3 cut(s) 184, 348, 370
BmiI GGNNCC 2 cut(s) 6, 371
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 647
Bpu14I TTCGAA 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 574
Bsa29I ATCGAT 1 cut(s) 834
BsaJI CCNNGG 3 cut(s) 58, 351, 876
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 347, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 142, 379, 823
Bse1I ACTGG 3 cut(s) 136, 511, 630
BseCI ATCGAT 1 cut(s) 834
BseDI CCNNGG 3 cut(s) 58, 351, 876
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 4 cut(s) 106, 142, 379, 823
BseMII CTCAG 2 cut(s) 351, 582
BseNI ACTGG 3 cut(s) 136, 511, 630
BseRI GAGGAG 2 cut(s) 233, 689
BseXI GCAGC 4 cut(s) 89, 114, 822, 825
Bsh1236I CGCG 2 cut(s) 116, 132
BshFI GGCC 3 cut(s) 63, 350, 559
BshVI ATCGAT 1 cut(s) 834
BslI CCNNNNNNNGG 4 cut(s) 106, 142, 379, 823
BsmAI GTCTC 2 cut(s) 223, 497
BsnI GGCC 3 cut(s) 63, 350, 559
Bsp119I TTCGAA 1 cut(s) 693
Bsp143I GATC 6 cut(s) 4, 172, 188, 298, 651, 831
BspACI CCGC 7 cut(s) 14, 75, 100, 114, 236, 512, 745
BspANI GGCC 3 cut(s) 63, 350, 559
BspCNI CTCAG 2 cut(s) 352, 583
BspDI ATCGAT 1 cut(s) 834
BspFNI CGCG 2 cut(s) 116, 132
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 6, 371
BspPI GGATC 3 cut(s) 12, 180, 659
BspT104I TTCGAA 1 cut(s) 693
BsrI ACTGG 3 cut(s) 136, 511, 630
BssECI CCNNGG 3 cut(s) 58, 351, 876
BssMI GATC 6 cut(s) 4, 172, 188, 298, 651, 831
BssT1I CCWWGG 2 cut(s) 351, 876
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 3 cut(s) 15, 453, 666
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 360, 591
BstENI CCTNNNNNAGG 1 cut(s) 821
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 2 cut(s) 116, 132
BstHHI GCGC 2 cut(s) 132, 250
BstKTI GATC 6 cut(s) 7, 175, 191, 301, 654, 834
BstMAI GTCTC 2 cut(s) 223, 497
BstMBI GATC 6 cut(s) 4, 172, 188, 298, 651, 831
BstMWI GCNNNNNNNGC 3 cut(s) 127, 245, 356
BstNSI RCATGY 1 cut(s) 519
BstUI CGCG 2 cut(s) 116, 132
BstV1I GCAGC 4 cut(s) 89, 114, 822, 825
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 834
BsuRI GGCC 3 cut(s) 63, 350, 559
BsuTUI ATCGAT 1 cut(s) 834
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 269, 623
Cac8I GCNNGC 1 cut(s) 290
CciI TCATGA 1 cut(s) 301
CfoI GCGC 2 cut(s) 132, 250
Cfr13I GGNCC 3 cut(s) 184, 348, 370
ClaI ATCGAT 1 cut(s) 834
Csp6I GTAC 2 cut(s) 139, 742
CviAII CATG 3 cut(s) 302, 516, 522
CviQI GTAC 2 cut(s) 139, 742
DdeI CTNAG 2 cut(s) 360, 591
DpnI GATC 6 cut(s) 6, 174, 190, 300, 653, 833
DpnII GATC 6 cut(s) 4, 172, 188, 298, 651, 831
Eam1104I CTCTTC 3 cut(s) 15, 453, 666
EarI CTCTTC 3 cut(s) 15, 453, 666
Eco130I CCWWGG 2 cut(s) 351, 876
Eco47I GGWCC 2 cut(s) 184, 370
Eco57I CTGAAG 3 cut(s) 462, 590, 690
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoT14I CCWWGG 2 cut(s) 351, 876
ErhI CCWWGG 2 cut(s) 351, 876
FaeI CATG 3 cut(s) 305, 519, 525
FaiI YATR 6 cut(s) 303, 517, 523, 542, 704, 783
FatI CATG 3 cut(s) 301, 515, 521
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 7 cut(s) 103, 114, 128, 237, 513, 811, 814
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 7 cut(s) 103, 114, 128, 237, 513, 811, 814
FspAI RTGCGCAY 1 cut(s) 249
FspBI CTAG 3 cut(s) 233, 467, 584
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 2 cut(s) 131, 249
GluI GCNGC 7 cut(s) 103, 114, 128, 237, 513, 811, 814
GsuI CTGGAG 1 cut(s) 647
HaeIII GGCC 3 cut(s) 63, 350, 559
HhaI GCGC 2 cut(s) 132, 250
Hin1II CATG 3 cut(s) 305, 519, 525
Hin6I GCGC 2 cut(s) 130, 248
HinP1I GCGC 2 cut(s) 130, 248
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 8 cut(s) 41, 82, 223, 259, 431, 473, 820, 851
HphI GGTGA 4 cut(s) 268, 441, 814, 864
Hpy166II GTNNAC 2 cut(s) 25, 141
Hpy188I TCNGA 6 cut(s) 38, 109, 228, 329, 609, 772
Hpy188III TCNNGA 3 cut(s) 86, 182, 302
Hpy8I GTNNAC 2 cut(s) 25, 141
Hpy99I CGWCG 2 cut(s) 29, 126
HpyAV CCTTC 6 cut(s) 157, 163, 274, 437, 625, 793
HpyCH4III ACNGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 245, 356
HpyF3I CTNAG 2 cut(s) 360, 591
Hsp92II CATG 3 cut(s) 305, 519, 525
HspAI GCGC 2 cut(s) 130, 248
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 6 cut(s) 4, 172, 188, 298, 651, 831
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 4 cut(s) 89, 114, 822, 825
LweI GCATC 1 cut(s) 259
MaeI CTAG 3 cut(s) 233, 467, 584
MaeIII GTNAC 2 cut(s) 266, 842
MalI GATC 6 cut(s) 6, 174, 190, 300, 653, 833
MboI GATC 6 cut(s) 4, 172, 188, 298, 651, 831
MboII GAAGA 6 cut(s) 470, 622, 650, 683, 707, 841
MflI RGATCY 1 cut(s) 4
MluCI AATT 5 cut(s) 89, 158, 389, 683, 760
MlyI GAGTC 4 cut(s) 50, 76, 268, 482
MmeI TCCRAC 2 cut(s) 255, 360
MroXI GAANNNNTTC 1 cut(s) 760
MslI CAYNNNNRTG 2 cut(s) 520, 786
MspA1I CMGCKG 1 cut(s) 102
MvnI CGCG 2 cut(s) 116, 132
MwoI GCNNNNNNNGC 3 cut(s) 127, 245, 356
NdeII GATC 6 cut(s) 4, 172, 188, 298, 651, 831
NlaIII CATG 3 cut(s) 305, 519, 525
NlaIV GGNNCC 2 cut(s) 6, 371
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 842
NsbI TGCGCA 1 cut(s) 249
NspI RCATGY 1 cut(s) 519
NspV TTCGAA 1 cut(s) 693
PagI TCATGA 1 cut(s) 301
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 113
PdmI GAANNNNTTC 1 cut(s) 760
PfeI GAWTC 4 cut(s) 223, 431, 820, 851
PflMI CCANNNNNTGG 1 cut(s) 379
PkrI GCNGC 7 cut(s) 104, 115, 129, 238, 514, 812, 815
PleI GAGTC 4 cut(s) 49, 76, 267, 481
PpsI GAGTC 4 cut(s) 49, 76, 267, 481
PspN4I GGNNCC 2 cut(s) 6, 371
PspPI GGNCC 3 cut(s) 184, 348, 370
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 140, 743
RsaNI GTAC 2 cut(s) 139, 742
RseI CAYNNNNRTG 2 cut(s) 520, 786
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 7 cut(s) 103, 114, 128, 237, 513, 811, 814
Sau3AI GATC 6 cut(s) 4, 172, 188, 298, 651, 831
Sau96I GGNCC 3 cut(s) 184, 348, 370
SchI GAGTC 4 cut(s) 50, 76, 268, 482
SetI ASST 8 cut(s) 99, 181, 454, 533, 681, 721, 804, 868
SfaNI GCATC 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 693
SinI GGWCC 2 cut(s) 184, 370
SmiMI CAYNNNNRTG 2 cut(s) 520, 786
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 5 cut(s) 89, 158, 389, 683, 760
SsiI CCGC 7 cut(s) 14, 75, 100, 114, 236, 512, 745
SspMI CTAG 3 cut(s) 233, 467, 584
StyI CCWWGG 2 cut(s) 351, 876
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 5 cut(s) 24, 44, 87, 693, 834
TaqII GACCGA 2 cut(s) 201, 321
TasI AATT 5 cut(s) 89, 158, 389, 683, 760
TatI WGTACW 1 cut(s) 138
TauI GCSGC 3 cut(s) 116, 239, 515
TfiI GAWTC 4 cut(s) 223, 431, 820, 851
TscAI CASTG 2 cut(s) 269, 630
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 4 cut(s) 102, 127, 810, 813
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 6 cut(s) 402, 423, 423, 510, 633, 729
TspRI CASTG 2 cut(s) 269, 630
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 184, 370
XagI CCTNNNNNAGG 1 cut(s) 821
XceI RCATGY 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 760
XspI CTAG 3 cut(s) 233, 467, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.