Rorug02G0148000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000497
Physical Location & Seq
Reverse (-)
12974277 .. 12975548
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0148000.1

Sequence Viewer

Length: 291 bp
ATGGAAGGCGCGTCGCAGCTGGTACGGACTGGAAGGAAGTCATCGATAGAAAGTGAGCCGAGAACGCTGGGGTTTCATCAGATCCAATATGCAAGGGAGGCAGCTGAGTACGTGATGAATACAAAGGATTTAGAAGAAGCAAAGCGCATTTTCACTCAGGGATTACAGCCAGTAGTGAGCGTGATGAAACCAACTGGAGAGGAGATGATGGATTCGGTTGACGAATTTGAGTATTCAGAAGGTCGATACCGATTATCTGAACTAAGGGATGTAGTCACAGCGCCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

4.88

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 2 cut(s) 24, 110
AluBI AGCT 2 cut(s) 19, 104
AluI AGCT 2 cut(s) 19, 104
AlwI GGATC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 16, 101
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 3 cut(s) 11, 147, 283
BbvI GCAGC 2 cut(s) 28, 113
BccI CCATC 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 284
BisI GCNGC 2 cut(s) 17, 102
BlsI GCNGC 2 cut(s) 18, 103
BpmI CTGGAG 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 112
Bse1I ACTGG 3 cut(s) 34, 170, 199
BseCI ATCGAT 1 cut(s) 44
BseGI GGATG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 96, 170
BseNI ACTGG 3 cut(s) 34, 170, 199
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 28, 113
BseYI CCCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 44
Bsp143I GATC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 97, 169
BspDI ATCGAT 1 cut(s) 44
BspFNI CGCG 1 cut(s) 11
BspPI GGATC 1 cut(s) 76
BsrI ACTGG 3 cut(s) 34, 170, 199
BssMI GATC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 112
BstDEI CTNAG 3 cut(s) 105, 156, 263
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 3 cut(s) 11, 147, 283
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 64, 98
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 28, 113
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 274
CfoI GCGC 3 cut(s) 11, 147, 283
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 2 cut(s) 23, 109
CviJI RGCY 4 cut(s) 19, 58, 104, 169
CviKI_1 RGCY 4 cut(s) 19, 58, 104, 169
CviQI GTAC 2 cut(s) 23, 109
DdeI CTNAG 3 cut(s) 105, 156, 263
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
FaiI YATR 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 17, 102
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 17, 102
GlaI GCGC 3 cut(s) 10, 146, 282
GluI GCNGC 2 cut(s) 17, 102
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 284
HhaI GCGC 3 cut(s) 11, 147, 283
Hin6I GCGC 3 cut(s) 9, 145, 281
HinP1I GCGC 3 cut(s) 9, 145, 281
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 81, 238, 259
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 27, 233
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 98
HpyF3I CTNAG 3 cut(s) 105, 156, 263
HpySE526I ACGT 1 cut(s) 111
HspAI GCGC 3 cut(s) 9, 145, 281
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 6 cut(s) 5, 15, 53, 143, 180, 183
Lsp1109I GCAGC 2 cut(s) 28, 113
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 146
MflI RGATCY 1 cut(s) 81
MluCI AATT 1 cut(s) 224
MnlI CCTC 2 cut(s) 91, 193
MspA1I CMGCKG 2 cut(s) 19, 104
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 64, 98
NdeII GATC 1 cut(s) 81
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 18, 103
Ppu21I YACGTR 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 2 cut(s) 19, 104
RsaI GTAC 2 cut(s) 24, 110
RsaNI GTAC 2 cut(s) 23, 109
SatI GCNGC 2 cut(s) 17, 102
Sau3AI GATC 1 cut(s) 81
SetI ASST 4 cut(s) 21, 106, 114, 244
Sse9I AATT 1 cut(s) 224
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 44, 244
TasI AATT 1 cut(s) 224
TfiI GAWTC 1 cut(s) 212
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 16, 101
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 65, 131, 200
TspGWI ACGGA 1 cut(s) 40
XapI RAATTY 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.