Rh5BG313200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000497
Physical Location & Seq
Reverse (-)
41528008 .. 41529679
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG313200.1

Sequence Viewer

Length: 237 bp
ATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTACGGGTCCAAGAGTTGGAGGATGAATTGAGGGAAGAATTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATTGACCAAAGATGAGACTGGGGCGGCATGTGCATTTTGGGAGGCCAATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.85

Weight (kDa)

4.24

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AciI CCGC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 2 cut(s) 88, 152
AhlI ACTAGT 1 cut(s) 160
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 2 cut(s) 30, 225
AspS9I GGNCC 2 cut(s) 30, 52
AsuHPI GGTGA 1 cut(s) 135
AvaII GGWCC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 30, 52
BmiI GGNNCC 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 205
BshFI GGCC 2 cut(s) 32, 227
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 32, 227
BspACI CCGC 1 cut(s) 206
BspANI GGCC 2 cut(s) 32, 227
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 38, 212
BstNSI RCATGY 1 cut(s) 213
BsuRI GGCC 2 cut(s) 32, 227
BtsCI GGATG 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 30, 52
CviAII CATG 1 cut(s) 210
CviJI RGCY 6 cut(s) 32, 41, 115, 141, 227, 234
CviKI_1 RGCY 6 cut(s) 32, 41, 115, 141, 227, 234
DdeI CTNAG 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 213
FaiI YATR 1 cut(s) 211
FatI CATG 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 2 cut(s) 32, 227
Hin1II CATG 1 cut(s) 213
HinfI GANTC 2 cut(s) 125, 167
HphI GGTGA 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 212
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 1 cut(s) 213
LpnPI CCDG 3 cut(s) 38, 159, 186
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 45
MboII GAAGA 2 cut(s) 92, 164
MluCI AATT 2 cut(s) 71, 83
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 7 cut(s) 10, 21, 31, 58, 69, 105, 217
MwoI GCNNNNNNNGC 2 cut(s) 38, 212
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 53
NspI RCATGY 1 cut(s) 213
PfeI GAWTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 30, 52
SatI GCNGC 1 cut(s) 207
Sau96I GGNCC 2 cut(s) 30, 52
SchI GAGTC 1 cut(s) 176
SetI ASST 2 cut(s) 148, 236
SinI GGWCC 1 cut(s) 52
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 2 cut(s) 71, 83
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 33
TasI AATT 2 cut(s) 71, 83
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 84, 117, 117
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 52
XceI RCATGY 1 cut(s) 213
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.