Rh7DG453000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000497
Physical Location & Seq
Forward (+)
64531422 .. 64535157
3736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG453000.1

Sequence Viewer

Length: 825 bp
ATGGATCCGCTTCCGCAAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTCGGCCTCCCCGTGTCCACACAGACTCTCGAATTGAAGCTCCGGTGCTCGGAAGCCGCGAGGCGACGGCTGCGCGACCAGTACACGGTTCTACTCGCCAAATTGAAGGAGAAGGATCAGGCTCTGGAGCGATCTAGGGCGGAGGCTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCGGAGTGTGCGCATCTGGTGAGTCAGTGCAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCGGGAACGAGGCGGACCAGAGGGCTAAGGAGGCTGAGTTTCGGGTTGAAGAGTTGGAGGATGAACTGGGAGAATTGAGGGAAGAGTTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGAAACATTGACCAAAGATGAGACTGGGGCGGCATGTGCATTTTTGGAGGCCAATAGCGGAAATGAGTCATGTCAAAGGTTGCTAAATATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTCTATCGCTAGTTGCTGAGTTGAAAACACTTCAAAAGAATAATGAAACACTTGAGAAGGATAAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTGAAAAGAGCAGAACGTTTTCTAATATTGATTCTTCCACTTCCATGTCAAACCCTATATAGTGTAATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.45

Weight (kDa)

4.87

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 270
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 116, 132
AciI CCGC 9 cut(s) 8, 14, 114, 197, 257, 260, 359, 554, 582
AclI AACGTT 1 cut(s) 766
AclWI GGATC 3 cut(s) 12, 180, 731
AcuI CTGAAG 2 cut(s) 504, 762
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 106, 142
AgsI TTSAA 7 cut(s) 94, 163, 395, 436, 500, 670, 680
AhlI ACTAGT 1 cut(s) 508
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 2 cut(s) 107, 311
Alw26I GTCTC 2 cut(s) 244, 539
AlwI GGATC 3 cut(s) 12, 180, 731
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 3 cut(s) 61, 573, 629
ApeKI GCWGC 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 768
AspLEI GCGC 2 cut(s) 132, 271
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 289, 483, 763
AvaII GGWCC 1 cut(s) 361
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 107, 311
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 334
BceAI ACGGC 2 cut(s) 140, 616
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 244, 539
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 4 cut(s) 192, 254, 509, 656
BisI GCNGC 4 cut(s) 114, 128, 258, 555
BlsI GCNGC 4 cut(s) 115, 129, 259, 556
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 2 cut(s) 422, 558
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 2 cut(s) 422, 558
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 2 cut(s) 216, 372
BpuEI CTTGAG 2 cut(s) 646, 719
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 142
Bse1I ACTGG 3 cut(s) 136, 417, 553
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 106, 142
BseMII CTCAG 3 cut(s) 230, 372, 654
BseNI ACTGG 3 cut(s) 136, 417, 553
BseRI GAGGAG 2 cut(s) 254, 761
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 2 cut(s) 116, 132
BshFI GGCC 3 cut(s) 63, 575, 631
BsiHKAI GWGCWC 2 cut(s) 107, 311
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 106, 142
BsmAI GTCTC 2 cut(s) 244, 539
BsnI GGCC 3 cut(s) 63, 575, 631
Bsp1286I GDGCHC 2 cut(s) 107, 311
Bsp143I GATC 5 cut(s) 4, 172, 188, 319, 723
BspACI CCGC 9 cut(s) 8, 14, 114, 197, 257, 260, 359, 554, 582
BspANI GGCC 3 cut(s) 63, 575, 631
BspCNI CTCAG 3 cut(s) 229, 373, 655
BspFNI CGCG 2 cut(s) 116, 132
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 12, 180, 731
BsrI ACTGG 3 cut(s) 136, 417, 553
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 5 cut(s) 4, 172, 188, 319, 723
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 4 cut(s) 390, 423, 495, 738
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 5 cut(s) 216, 372, 381, 663, 719
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 2 cut(s) 116, 132
BstHHI GCGC 2 cut(s) 132, 271
BstKTI GATC 5 cut(s) 7, 175, 191, 322, 726
BstMAI GTCTC 2 cut(s) 244, 539
BstMBI GATC 5 cut(s) 4, 172, 188, 319, 723
BstMWI GCNNNNNNNGC 4 cut(s) 127, 266, 377, 560
BstNSI RCATGY 1 cut(s) 561
BstUI CGCG 2 cut(s) 116, 132
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 63, 575, 631
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 311
CaiI CAGNNNCTG 1 cut(s) 181
CciI TCATGA 1 cut(s) 322
CfoI GCGC 2 cut(s) 132, 271
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 139
CviAII CATG 4 cut(s) 323, 558, 594, 795
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 5 cut(s) 216, 372, 381, 663, 719
DpnI GATC 5 cut(s) 6, 174, 190, 321, 725
DpnII GATC 5 cut(s) 4, 172, 188, 319, 723
Eam1104I CTCTTC 4 cut(s) 390, 423, 495, 738
EarI CTCTTC 4 cut(s) 390, 423, 495, 738
EciI GGCGGA 3 cut(s) 212, 275, 374
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 504, 762
FaeI CATG 4 cut(s) 326, 561, 597, 798
FaiI YATR 9 cut(s) 209, 318, 324, 559, 595, 614, 796, 808, 810
FatI CATG 4 cut(s) 322, 557, 593, 794
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 4 cut(s) 114, 128, 258, 555
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 4 cut(s) 114, 128, 258, 555
FspAI RTGCGCAY 1 cut(s) 270
FspBI CTAG 4 cut(s) 192, 254, 509, 656
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 2 cut(s) 131, 270
GluI GCNGC 4 cut(s) 114, 128, 258, 555
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 3 cut(s) 63, 575, 631
HapII CCGG 1 cut(s) 100
HhaI GCGC 2 cut(s) 132, 271
Hin1II CATG 4 cut(s) 326, 561, 597, 798
Hin6I GCGC 2 cut(s) 130, 269
HinP1I GCGC 2 cut(s) 130, 269
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 8 cut(s) 41, 82, 244, 280, 473, 515, 590, 781
HpaII CCGG 1 cut(s) 100
HphI GGTGA 3 cut(s) 289, 483, 763
Hpy166II GTNNAC 3 cut(s) 25, 75, 141
Hpy188I TCNGA 3 cut(s) 38, 109, 249
Hpy188III TCNNGA 4 cut(s) 86, 182, 323, 349
Hpy8I GTNNAC 3 cut(s) 25, 75, 141
Hpy99I CGWCG 2 cut(s) 29, 126
HpyAV CCTTC 5 cut(s) 157, 163, 295, 479, 697
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 2 cut(s) 288, 563
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 266, 377, 560
HpyF3I CTNAG 5 cut(s) 216, 372, 381, 663, 719
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 4 cut(s) 326, 561, 597, 798
HspAI GCGC 2 cut(s) 130, 269
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 5 cut(s) 4, 172, 188, 319, 723
LmnI GCTCC 2 cut(s) 102, 184
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 280
MaeI CTAG 4 cut(s) 192, 254, 509, 656
MaeII ACGT 1 cut(s) 766
MalI GATC 5 cut(s) 6, 174, 190, 321, 725
MboI GATC 5 cut(s) 4, 172, 188, 319, 723
MboII GAAGA 6 cut(s) 407, 440, 512, 722, 755, 776
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 107, 311
MluCI AATT 3 cut(s) 89, 158, 419
MlyI GAGTC 5 cut(s) 50, 76, 289, 524, 599
MmeI TCCRAC 2 cut(s) 276, 381
MroXI GAANNNNTTC 1 cut(s) 768
MslI CAYNNNNRTG 1 cut(s) 793
MspI CCGG 1 cut(s) 100
MvnI CGCG 2 cut(s) 116, 132
MwoI GCNNNNNNNGC 4 cut(s) 127, 266, 377, 560
NdeII GATC 5 cut(s) 4, 172, 188, 319, 723
NlaIII CATG 4 cut(s) 326, 561, 597, 798
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 39
NsbI TGCGCA 1 cut(s) 270
NspI RCATGY 1 cut(s) 561
PagI TCATGA 1 cut(s) 322
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 113
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 3 cut(s) 244, 473, 781
PkrI GCNGC 4 cut(s) 115, 129, 259, 556
PleI GAGTC 5 cut(s) 49, 76, 288, 523, 598
PpsI GAGTC 5 cut(s) 49, 76, 288, 523, 598
Psp1406I AACGTT 1 cut(s) 766
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 793
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 4 cut(s) 114, 128, 258, 555
Sau3AI GATC 5 cut(s) 4, 172, 188, 319, 723
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 5 cut(s) 50, 76, 289, 524, 599
SduI GDGCHC 2 cut(s) 107, 311
SetI ASST 5 cut(s) 99, 496, 605, 753, 769
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 793
SmlI CTYRAG 2 cut(s) 625, 698
SmoI CTYRAG 2 cut(s) 625, 698
SpeI ACTAGT 1 cut(s) 508
Sse9I AATT 3 cut(s) 89, 158, 419
SsiI CCGC 9 cut(s) 8, 14, 114, 197, 257, 260, 359, 554, 582
SspI AATATT 1 cut(s) 777
SspMI CTAG 4 cut(s) 192, 254, 509, 656
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 769
TaqI TCGA 3 cut(s) 24, 44, 87
TaqII GACCGA 1 cut(s) 342
TasI AATT 3 cut(s) 89, 158, 419
TatI WGTACW 1 cut(s) 138
TauI GCSGC 3 cut(s) 116, 260, 557
TfiI GAWTC 3 cut(s) 244, 473, 781
TscAI CASTG 1 cut(s) 290
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 5 cut(s) 224, 423, 465, 465, 705
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 1 cut(s) 561
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 4 cut(s) 192, 254, 509, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.