Rroxscaffold_1G00034810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000497
Physical Location & Seq
Forward (+)
50553859 .. 50557536
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034810.1

Sequence Viewer

Length: 174 bp
ATGTGTTTTTGGTTTCAGGCCGAGGCTTGTATGAATGCTCAGGCTTTGAGGAAGTTCGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTTCTTGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.79

Weight (kDa)

4.92

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AciI CCGC 1 cut(s) 80
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 112
BccI CCATC 1 cut(s) 157
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmsI GCATC 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
BseDI CCNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 145
CfoI GCGC 1 cut(s) 94
CviAII CATG 1 cut(s) 146
CviJI RGCY 4 cut(s) 20, 26, 44, 158
CviKI_1 RGCY 4 cut(s) 20, 26, 44, 158
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 32, 141, 147
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspAI RTGCGCAY 1 cut(s) 93
FspBI CTAG 1 cut(s) 77
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 20
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 2 cut(s) 67, 103
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 72, 173
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 2, 26, 83
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 4 cut(s) 16, 42, 55, 148
MroXI GAANNNNTTC 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 46
NsbI TGCGCA 1 cut(s) 93
PagI TCATGA 1 cut(s) 145
PctI GAATGC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 112
SfaNI GCATC 1 cut(s) 103
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 77
TaqII GACCGA 1 cut(s) 165
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.