Rh5DG323600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000497
Physical Location & Seq
Reverse (-)
42291970 .. 42292788
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG323600.1

Sequence Viewer

Length: 534 bp
ATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGTAACACTTGAGAAGGATGAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGACGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAATAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGGTAAGAGAAAGGGAGAAGAATAGCTTTGATTGCATGTTTTACTATGCTCTTATACTTTCCTTGGCATTTCATGTCCATGAAATTGTAGTAGGATCTAATTTTATGCATTCTCCCCTTTTGCAGTCAAACAAGCGAAAATCTAGCTCTAAGGTGATGAGCAGCAGCCCGATTCAGGGGAAGATCGATTTCAGTGACCAAGAATCATCAGCAAGACAACCTCTCTCACCGTTGCGTTGTAACTCCCCTAACTCAAGACTGCATAAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.33

Weight (kDa)

9.44

Isoelectric Point (pI)

67.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AciI CCGC 1 cut(s) 205
AclWI GGATC 2 cut(s) 119, 361
AcuI CTGAAG 2 cut(s) 50, 150
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 433, 434
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 3 cut(s) 179, 285, 405
AluI AGCT 3 cut(s) 179, 285, 405
AlwI GGATC 2 cut(s) 119, 361
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 420, 423
Asp700I GAANNNNTTC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 424, 477
AsuII TTCGAA 1 cut(s) 153
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BbvI GCAGC 2 cut(s) 432, 435
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 4
BfaI CTAG 2 cut(s) 44, 402
BisI GCNGC 2 cut(s) 421, 424
BlsI GCNGC 2 cut(s) 422, 425
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 3 cut(s) 34, 107, 496
Bsa29I ATCGAT 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 434
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 433, 434
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 432, 435
BshFI GGCC 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 444
BslI CCNNNNNNNGG 2 cut(s) 433, 434
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 3 cut(s) 111, 353, 441
BspACI CCGC 1 cut(s) 205
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 43
BspDI ATCGAT 1 cut(s) 444
BspPI GGATC 2 cut(s) 119, 361
BspT104I TTCGAA 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 3 cut(s) 111, 353, 441
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 51, 107, 408
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 3 cut(s) 114, 356, 444
BstMBI GATC 3 cut(s) 111, 353, 441
BstMWI GCNNNNNNNGC 2 cut(s) 291, 526
BstNSI RCATGY 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 432, 435
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 444
BsuRI GGCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 444
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 457
ClaI ATCGAT 1 cut(s) 444
Csp6I GTAC 1 cut(s) 202
CviAII CATG 3 cut(s) 295, 332, 338
CviJI RGCY 6 cut(s) 12, 19, 179, 285, 405, 426
CviKI_1 RGCY 6 cut(s) 12, 19, 179, 285, 405, 426
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 51, 107, 408
DpnI GATC 3 cut(s) 113, 355, 443
DpnII GATC 3 cut(s) 111, 353, 441
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 321
Eco57I CTGAAG 2 cut(s) 50, 150
EcoT14I CCWWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 298, 335, 341
FaiI YATR 8 cut(s) 243, 296, 306, 314, 333, 339, 365, 522
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FatI CATG 3 cut(s) 294, 331, 337
Fnu4HI GCNGC 2 cut(s) 421, 424
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 421, 424
FspBI CTAG 2 cut(s) 44, 402
GluI GCNGC 2 cut(s) 421, 424
HaeIII GGCC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 3 cut(s) 298, 335, 341
HinfI GANTC 2 cut(s) 430, 461
HphI GGTGA 2 cut(s) 424, 477
Hpy188I TCNGA 2 cut(s) 69, 232
Hpy188III TCNNGA 1 cut(s) 513
HpyAV CCTTC 2 cut(s) 85, 253
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 294, 367, 382, 520
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 526
HpyF3I CTNAG 3 cut(s) 51, 107, 408
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 3 cut(s) 298, 335, 341
Kzo9I GATC 3 cut(s) 111, 353, 441
LpnPI CCDG 2 cut(s) 210, 419
Lsp1109I GCAGC 2 cut(s) 432, 435
MaeI CTAG 2 cut(s) 44, 402
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 79, 452, 497
MalI GATC 3 cut(s) 113, 355, 443
MboI GATC 3 cut(s) 111, 353, 441
MboII GAAGA 7 cut(s) 82, 110, 110, 143, 167, 289, 451
MflI RGATCY 1 cut(s) 353
MluCI AATT 4 cut(s) 143, 220, 342, 358
MnlI CCTC 3 cut(s) 9, 127, 489
Mph1103I ATGCAT 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 220
MslI CAYNNNNRTG 2 cut(s) 246, 336
Mva1269I GAATGC 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 291, 526
NdeII GATC 3 cut(s) 111, 353, 441
NlaIII CATG 3 cut(s) 298, 335, 341
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 1 cut(s) 298
NspV TTCGAA 1 cut(s) 153
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 430, 461
PkrI GCNGC 2 cut(s) 422, 425
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 2 cut(s) 246, 336
SatI GCNGC 2 cut(s) 421, 424
Sau3AI GATC 3 cut(s) 111, 353, 441
SetI ASST 7 cut(s) 141, 181, 264, 287, 407, 414, 481
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 246, 336
SmlI CTYRAG 3 cut(s) 13, 86, 511
SmoI CTYRAG 3 cut(s) 13, 86, 511
Sse9I AATT 4 cut(s) 143, 220, 342, 358
SsiI CCGC 1 cut(s) 205
SspMI CTAG 2 cut(s) 44, 402
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 153, 444
TasI AATT 4 cut(s) 143, 220, 342, 358
TfiI GAWTC 2 cut(s) 430, 461
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 420, 423
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 111, 189, 320, 354
TspRI CASTG 1 cut(s) 457
XceI RCATGY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 2 cut(s) 44, 402
ZraI GACGTC 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.