Rorug05G0218300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000497
Physical Location & Seq
Forward (+)
22445343 .. 22449986
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0218300.1

Sequence Viewer

Length: 462 bp
ATGGCGAACAGTAACCTTCCCCGGAGGATCATCAAGGAAACTCAGCGTCTCCTCAGTGAACCTGCTCCGGGAATTAGTGCTTCGCCATCGGAAGACAATATGCGGTATTTCAATGTGATGATCCTTGGCCCGACTCAATCTCCGTATGAAGGAGGAGTTTTCAAGTTGGAACTATTTTTGCCTGAAGAATATCCTATGGCTGCACCAAAGGTTCGGTTTCTCACTAAAATTTATCATCCTAACATTGACAAGCTGGGAAGGATATGCCTTGACATTTTGAAAGACAAGTGGAGTCCTGCTCTACAGATACGAACTGTTCTTCTCAGTATTCAAGCACTTTTGAGTGCTCCAAATCCCGATGATCCGCTCTCTGAGAACATCGCTAAGCATTGGAAATCAAATGAGGCGGAAGCTGTTGAAACAGCCAAGGAATGGACCCGTTTATATGCAAGTGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.23

Weight (kDa)

6.74

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 9 - 145 6.9e-51 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 432
AccBSI CCGCTC 1 cut(s) 367
AciI CCGC 3 cut(s) 103, 365, 407
AclWI GGATC 3 cut(s) 35, 115, 356
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 3 cut(s) 68, 149, 432
AgsI TTSAA 5 cut(s) 112, 163, 280, 332, 419
AluBI AGCT 2 cut(s) 253, 413
AluI AGCT 2 cut(s) 253, 413
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 3 cut(s) 35, 115, 356
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 128, 435
AsuC2I CCSGG 2 cut(s) 22, 69
AvaII GGWCC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 94
BcnI CCSGG 2 cut(s) 22, 69
BcoDI GTCTC 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 1 cut(s) 201
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 22, 69
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 128, 435
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 22, 69
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 283, 315
Bpu1102I GCTNAGC 1 cut(s) 384
BpuMI CCSGG 2 cut(s) 22, 69
BsaJI CCNNGG 3 cut(s) 20, 124, 426
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 149, 432
BseDI CCNNGG 3 cut(s) 20, 124, 426
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 68, 149, 432
BseMII CTCAG 4 cut(s) 56, 67, 337, 363
BseRI GAGGAG 2 cut(s) 41, 168
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 22, 68
BslI CCNNNNNNNGG 3 cut(s) 68, 149, 432
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 3 cut(s) 27, 120, 361
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 3 cut(s) 103, 365, 407
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 4 cut(s) 55, 66, 336, 364
BspLI GGNNCC 1 cut(s) 437
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 3 cut(s) 35, 115, 356
BsrBI CCGCTC 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 20, 124, 426
BssMI GATC 3 cut(s) 27, 120, 361
BssT1I CCWWGG 2 cut(s) 124, 426
Bst4CI ACNGT 2 cut(s) 11, 316
BstDEI CTNAG 5 cut(s) 42, 53, 323, 372, 384
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 3 cut(s) 30, 123, 364
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 27, 120, 361
BstSCI CCNGG 2 cut(s) 20, 67
BstSFI CTRYAG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 128, 435
CseI GACGC 1 cut(s) 35
CviJI RGCY 5 cut(s) 129, 200, 253, 413, 425
CviKI_1 RGCY 5 cut(s) 129, 200, 253, 413, 425
DdeI CTNAG 5 cut(s) 42, 53, 323, 372, 384
DpnI GATC 3 cut(s) 29, 122, 363
DpnII GATC 3 cut(s) 27, 120, 361
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 2 cut(s) 124, 426
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 124, 426
ErhI CCWWGG 2 cut(s) 124, 426
Esp3I CGTCTC 1 cut(s) 53
FaiI YATR 6 cut(s) 101, 147, 197, 265, 445, 447
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 129
HapII CCGG 2 cut(s) 22, 68
HgaI GACGC 1 cut(s) 35
HinfI GANTC 2 cut(s) 133, 292
HpaII CCGG 2 cut(s) 22, 68
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 91, 373
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 26, 143, 252
HpyCH4III ACNGT 2 cut(s) 11, 316
HpyCH4V TGCA 2 cut(s) 203, 449
HpyF3I CTNAG 5 cut(s) 42, 53, 323, 372, 384
Kzo9I GATC 3 cut(s) 27, 120, 361
LmnI GCTCC 2 cut(s) 70, 352
LpnPI CCDG 6 cut(s) 35, 75, 81, 195, 239, 309
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 11
MalI GATC 3 cut(s) 29, 122, 363
MbiI CCGCTC 1 cut(s) 367
MboI GATC 3 cut(s) 27, 120, 361
MboII GAAGA 3 cut(s) 104, 197, 311
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 2 cut(s) 72, 228
MlyI GAGTC 2 cut(s) 127, 301
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 4 cut(s) 18, 62, 146, 397
MspI CCGG 2 cut(s) 22, 68
MspR9I CCNGG 2 cut(s) 22, 69
NciI CCSGG 2 cut(s) 22, 69
NdeII GATC 3 cut(s) 27, 120, 361
NlaIV GGNNCC 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 432
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 2 cut(s) 127, 300
PpsI GAGTC 2 cut(s) 127, 300
PspFI CCCAGC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 2 cut(s) 128, 435
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 3 cut(s) 27, 120, 361
Sau96I GGNCC 2 cut(s) 128, 435
SchI GAGTC 2 cut(s) 127, 301
ScrFI CCNGG 2 cut(s) 22, 69
SduI GDGCHC 1 cut(s) 349
SetI ASST 5 cut(s) 18, 64, 213, 255, 415
SfcI CTRYAG 1 cut(s) 302
SinI GGWCC 1 cut(s) 435
Sse9I AATT 2 cut(s) 72, 228
SsiI CCGC 3 cut(s) 103, 365, 407
StyD4I CCNGG 2 cut(s) 20, 67
StyI CCWWGG 2 cut(s) 124, 426
TaaI ACNGT 2 cut(s) 11, 316
TasI AATT 2 cut(s) 72, 228
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.