Rh2BG555200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000497
Physical Location & Seq
Reverse (-)
76422647 .. 76432911
10265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG555200.1

Sequence Viewer

Length: 279 bp
ATGCCAGATCGATGGAGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTGGAGAAGGATAAAGAACATCAAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGTCAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.73

Weight (kDa)

9.22

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AclWI GGATC 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 56, 156
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 2 cut(s) 18, 185
AluI AGCT 2 cut(s) 18, 185
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 159
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BccI CCATC 2 cut(s) 6, 233
BceAI ACGGC 1 cut(s) 10
BfaI CTAG 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 10
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 10
BsnI GGCC 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 159
Bsp143I GATC 2 cut(s) 7, 117
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 10
BspPI GGATC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 96
BssMI GATC 2 cut(s) 7, 117
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 57
BstKTI GATC 2 cut(s) 10, 120
BstMBI GATC 2 cut(s) 7, 117
BstXI CCANNNNNNTGG 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 10
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 89
ClaI ATCGAT 1 cut(s) 10
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 3 cut(s) 18, 25, 185
CviKI_1 RGCY 3 cut(s) 18, 25, 185
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 9, 119
DpnII GATC 2 cut(s) 7, 117
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 56, 156
FaiI YATR 1 cut(s) 249
FspBI CTAG 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 75, 238
HpyAV CCTTC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 57
Kzo9I GATC 2 cut(s) 7, 117
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 3 cut(s) 18, 77, 216
MaeI CTAG 1 cut(s) 50
MalI GATC 2 cut(s) 9, 119
MboI GATC 2 cut(s) 7, 117
MboII GAAGA 4 cut(s) 88, 116, 149, 173
MluCI AATT 2 cut(s) 149, 226
MnlI CCTC 3 cut(s) 15, 133, 136
MroXI GAANNNNTTC 1 cut(s) 226
MslI CAYNNNNRTG 1 cut(s) 252
NdeII GATC 2 cut(s) 7, 117
NspV TTCGAA 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 226
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 252
Sau3AI GATC 2 cut(s) 7, 117
SetI ASST 3 cut(s) 20, 147, 187
SfuI TTCGAA 1 cut(s) 159
SgeI CNNG 6 cut(s) 17, 31, 62, 104, 226, 243
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 2 cut(s) 149, 226
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 50
TaqI TCGA 2 cut(s) 10, 159
TasI AATT 2 cut(s) 149, 226
TscAI CASTG 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 99, 195
TspRI CASTG 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.