Rw5G027900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000497
Physical Location & Seq
Forward (+)
41618712 .. 41619679
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027900.1

Sequence Viewer

Length: 489 bp
ATGTTGAAGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATCGACCAAAGATGAGACTGGGGCGGCATGTGCATTTTTGGAGCCAATAGCTGAAATGGGTCATTTGAAAATACTTCAGAAGAATAATGAAACACTTGAGAAGGATAAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTTCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACTGCAAGGAAAGAAACAATTCTGGTTCCGATGGAAAGCATACTGATGTATCAACAAAGTCAAACAAGCGAAAATCTAGCTCTAAGGTGATGAGCAGCAGCCTGATTCAGGGGAAGAACGATTTCAGTGACCAAGAATCAGCAAGACAACCTCTCTCACCCTTGCGTTGTAACTCACCTAACTCAAGACTGCATAAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.13

Weight (kDa)

7.7

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 3 cut(s) 45, 131, 231
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 3 cut(s) 7, 41, 139
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 3 cut(s) 122, 260, 363
AluI AGCT 3 cut(s) 122, 260, 363
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 378, 381
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 2 cut(s) 301, 404
AsuHPI GGTGA 4 cut(s) 24, 382, 432, 450
AsuII TTCGAA 1 cut(s) 234
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BbvI GCAGC 2 cut(s) 390, 393
BccI CCATC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 80
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 360
BisI GCNGC 3 cut(s) 96, 379, 382
BlsI GCNGC 3 cut(s) 97, 380, 383
BmcAI AGTACT 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 114, 310
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 188, 451
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 390, 393
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 234
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 114, 310
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 234
BsrI ACTGG 1 cut(s) 94
BssMI GATC 1 cut(s) 192
Bst6I CTCTTC 2 cut(s) 36, 207
BstBI TTCGAA 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 188, 366
BstENI CCTNNNNNAGG 1 cut(s) 389
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 101, 481
BstNSI RCATGY 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 390, 393
BtsIMutI CAGTG 1 cut(s) 415
Csp6I GTAC 1 cut(s) 283
CviAII CATG 1 cut(s) 99
CviJI RGCY 6 cut(s) 30, 115, 122, 260, 363, 384
CviKI_1 RGCY 6 cut(s) 30, 115, 122, 260, 363, 384
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 188, 366
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 36, 207
EarI CTCTTC 2 cut(s) 36, 207
Eco57I CTGAAG 3 cut(s) 45, 131, 231
EcoNI CCTNNNNNAGG 1 cut(s) 389
FaeI CATG 1 cut(s) 102
FaiI YATR 3 cut(s) 100, 324, 477
FatI CATG 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 96, 379, 382
Fsp4HI GCNGC 3 cut(s) 96, 379, 382
FspBI CTAG 2 cut(s) 50, 360
GluI GCNGC 3 cut(s) 96, 379, 382
Hin1II CATG 1 cut(s) 102
HinfI GANTC 4 cut(s) 14, 56, 388, 419
HphI GGTGA 4 cut(s) 24, 382, 432, 450
Hpy188I TCNGA 2 cut(s) 150, 313
Hpy188III TCNNGA 1 cut(s) 468
HpyAV CCTTC 2 cut(s) 20, 166
HpyCH4V TGCA 3 cut(s) 104, 288, 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 481
HpyF3I CTNAG 2 cut(s) 188, 366
Hsp92II CATG 1 cut(s) 102
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 48, 75, 291, 377, 398
Lsp1109I GCAGC 2 cut(s) 390, 393
MaeI CTAG 2 cut(s) 50, 360
MaeIII GTNAC 2 cut(s) 410, 452
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 6 cut(s) 53, 163, 191, 224, 248, 409
MluCI AATT 2 cut(s) 224, 301
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 3 cut(s) 208, 211, 444
MroXI GAANNNNTTC 2 cut(s) 301, 404
MslI CAYNNNNRTG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 101, 481
NdeII GATC 1 cut(s) 192
NlaIII CATG 1 cut(s) 102
NlaIV GGNNCC 2 cut(s) 114, 310
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 1 cut(s) 102
NspV TTCGAA 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 301, 404
PfeI GAWTC 3 cut(s) 14, 388, 419
PkrI GCNGC 3 cut(s) 97, 380, 383
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 114, 310
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 327
SatI GCNGC 3 cut(s) 96, 379, 382
Sau3AI GATC 1 cut(s) 192
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 1 cut(s) 65
SetI ASST 9 cut(s) 12, 37, 124, 222, 262, 365, 372, 436, 463
SfuI TTCGAA 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 167, 466
SmoI CTYRAG 2 cut(s) 167, 466
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 2 cut(s) 224, 301
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 50, 360
TaqI TCGA 2 cut(s) 74, 234
TasI AATT 2 cut(s) 224, 301
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 3 cut(s) 14, 388, 419
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 378, 381
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 6, 174, 270
TspRI CASTG 1 cut(s) 415
XagI CCTNNNNNAGG 1 cut(s) 389
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 102
XmnI GAANNNNTTC 2 cut(s) 301, 404
XspI CTAG 2 cut(s) 50, 360
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.