Rmu_sc0002988.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002988.1
OG0000497
Physical Location & Seq
Reverse (-)
15665 .. 16322
658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002988.1_g000004.1.cds

Sequence Viewer

Length: 429 bp
atgcttaaaatttcttttcgtttacctggcagcttgaggccgtcatctcaaaaagttttgtcgctagttgctgagttgaaaacacttcagaagaataatgaaacacttgagaaggataaagaacatctaaggatcaatctgctttctgctgaagaggaggtcaaattgcttttcaaagaaaacaaagtgttagatgaagctaacaaaagattactaaagcagtaccgcaaggaaagaaacaattctggttctgatggaaagcatactgatgtatcaacgaagtcaaacaagcgaaaatctagctctaaggtgatgagcagcggcccgattcaggggaagatcgatttcagtgaccaagaatcagcaagacaacctgtctcacccttgcgttgtaactcccctaactcaagactgcataaaaagcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.16

Weight (kDa)

10.04

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 226, 321
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 71, 171
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 331, 332
AgsI TTSAA 2 cut(s) 79, 175
AhdI GACNNNNNGTC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 3 cut(s) 33, 200, 303
AluI AGCT 3 cut(s) 33, 200, 303
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 140
AoxI GGCC 2 cut(s) 38, 322
ApeKI GCWGC 2 cut(s) 30, 318
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 322, 372
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BbvI GCAGC 2 cut(s) 42, 330
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 2 cut(s) 65, 300
BisI GCNGC 3 cut(s) 31, 319, 322
BlsI GCNGC 3 cut(s) 32, 320, 323
Bme1390I CCNGG 1 cut(s) 27
BmeRI GACNNNNNGTC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 27
BpuEI CTTGAG 3 cut(s) 55, 128, 391
Bsa29I ATCGAT 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 332
BseBI CCWGG 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 342
BseLI CCNNNNNNNGG 2 cut(s) 331, 332
BseMII CTCAG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 42, 330
BshFI GGCC 2 cut(s) 40, 324
BshVI ATCGAT 1 cut(s) 342
BslI CCNNNNNNNGG 2 cut(s) 331, 332
BsmAI GTCTC 1 cut(s) 382
BsnI GGCC 2 cut(s) 40, 324
Bsp143I GATC 2 cut(s) 132, 339
BspACI CCGC 2 cut(s) 226, 321
BspANI GGCC 2 cut(s) 40, 324
BspCNI CTCAG 1 cut(s) 64
BspDI ATCGAT 1 cut(s) 342
BspPI GGATC 1 cut(s) 140
BssMI GATC 2 cut(s) 132, 339
Bst2UI CCWGG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 72, 128, 306
BstKTI GATC 2 cut(s) 135, 342
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 132, 339
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 42, 330
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 2 cut(s) 40, 324
BsuTUI ATCGAT 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 323
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 5 cut(s) 33, 40, 200, 303, 324
CviKI_1 RGCY 5 cut(s) 33, 40, 200, 303, 324
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 3 cut(s) 72, 128, 306
DpnI GATC 2 cut(s) 134, 341
DpnII GATC 2 cut(s) 132, 339
DriI GACNNNNNGTC 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 147
Eam1105I GACNNNNNGTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 71, 171
EcoRII CCWGG 1 cut(s) 25
FaiI YATR 2 cut(s) 264, 417
Fnu4HI GCNGC 3 cut(s) 31, 319, 322
Fsp4HI GCNGC 3 cut(s) 31, 319, 322
FspBI CTAG 2 cut(s) 65, 300
GluI GCNGC 3 cut(s) 31, 319, 322
HaeIII GGCC 2 cut(s) 40, 324
HinfI GANTC 2 cut(s) 328, 359
HphI GGTGA 2 cut(s) 322, 372
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 90, 253
Hpy188III TCNNGA 1 cut(s) 408
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 3 cut(s) 72, 128, 306
Kzo9I GATC 2 cut(s) 132, 339
LpnPI CCDG 5 cut(s) 12, 39, 231, 317, 387
Lsp1109I GCAGC 2 cut(s) 42, 330
MaeI CTAG 2 cut(s) 65, 300
MaeIII GTNAC 2 cut(s) 350, 392
MalI GATC 2 cut(s) 134, 341
MboI GATC 2 cut(s) 132, 339
MboII GAAGA 3 cut(s) 103, 164, 349
MluCI AATT 3 cut(s) 9, 164, 241
MnlI CCTC 3 cut(s) 30, 148, 151
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 421
NdeII GATC 2 cut(s) 132, 339
NmuCI GTSAC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 2 cut(s) 328, 359
PkrI GCNGC 3 cut(s) 32, 320, 323
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspPI GGNCC 1 cut(s) 323
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 3 cut(s) 31, 319, 322
Sau3AI GATC 2 cut(s) 132, 339
Sau96I GGNCC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 27
SetI ASST 7 cut(s) 28, 35, 162, 202, 305, 312, 376
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 3 cut(s) 34, 107, 406
SmoI CTYRAG 3 cut(s) 34, 107, 406
Sse9I AATT 3 cut(s) 9, 164, 241
SsiI CCGC 2 cut(s) 226, 321
SspMI CTAG 2 cut(s) 65, 300
StyD4I CCNGG 1 cut(s) 25
TaqI TCGA 1 cut(s) 342
TasI AATT 3 cut(s) 9, 164, 241
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 2 cut(s) 328, 359
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 30, 318
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 114, 210
TspRI CASTG 1 cut(s) 355
XapI RAATTY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 2 cut(s) 65, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.