RchiOBHm_Chr7g0238301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000497
Physical Location & Seq
Forward (+)
63657578 .. 63658896
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21355

Sequence Viewer

Length: 396 bp
ATGACAAGAATGGATCTTCCGCAAGAAATCGACGATTCCATCAAAGAGATAATTGACCACATCCTGGGCCTCCCTGTGTCCACACAAACTCTCAAATTGAAGCTCCAGTTCTTAGAAGTGGCAAAGCAACGGATGCACGACCAGTACTCGCTTCTACTTGCCAAATTGAAAGAGAAGGATCAAGCACTGGGGTGCTTTAAGGTCGAGGCATGTATGAACGCTCAGGCTTTGAGGAAGTTCATGGAGGAGAATCAGATACTAGAGTGTGCTTATTTAGTGAGTCAGTGTAACAAGTTGGAGAATGAGTGCTTGCTCTACGATCATAATAGAGAGGCTTTGATGGATTTTAGGTACAACGCTAATCAGAGGGCCAAGGAGGATGAGTTTCGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.41

Weight (kDa)

5.41

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AciI CCGC 1 cut(s) 20
AclWI GGATC 2 cut(s) 21, 186
AfaI GTAC 2 cut(s) 146, 353
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 100, 169
AjnI CCWGG 1 cut(s) 63
AleI CACNNNNGTG 1 cut(s) 190
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 2 cut(s) 21, 186
AoxI GGCC 2 cut(s) 67, 369
AspS9I GGNCC 2 cut(s) 67, 369
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BccI CCATC 2 cut(s) 47, 334
BciT130I CCWGG 1 cut(s) 65
BfaI CTAG 1 cut(s) 260
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 67, 369
BmrFI CCNGG 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 64, 372
BsaXI ACNNNNNCTCC 3 cut(s) 290, 320, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 3 cut(s) 106, 142, 192
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 64, 372
BseGI GGATG 3 cut(s) 60, 138, 385
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 3 cut(s) 106, 142, 192
BseRI GAGGAG 1 cut(s) 260
BshFI GGCC 2 cut(s) 69, 371
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 2 cut(s) 69, 371
Bsp143I GATC 3 cut(s) 13, 178, 319
BspACI CCGC 1 cut(s) 20
BspANI GGCC 2 cut(s) 69, 371
BspCNI CTCAG 1 cut(s) 235
BspPI GGATC 2 cut(s) 21, 186
BsrI ACTGG 3 cut(s) 106, 142, 192
BssECI CCNNGG 2 cut(s) 64, 372
BssMI GATC 3 cut(s) 13, 178, 319
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 112, 222
BstF5I GGATG 3 cut(s) 60, 138, 385
BstKTI GATC 3 cut(s) 16, 181, 322
BstMBI GATC 3 cut(s) 13, 178, 319
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 2 cut(s) 69, 371
BtsCI GGATG 3 cut(s) 60, 138, 385
BtsIMutI CAGTG 2 cut(s) 185, 290
Cac8I GCNNGC 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 67, 369
Csp6I GTAC 2 cut(s) 145, 352
CviAII CATG 2 cut(s) 210, 241
CviJI RGCY 5 cut(s) 69, 103, 227, 335, 371
CviKI_1 RGCY 5 cut(s) 69, 103, 227, 335, 371
CviQI GTAC 2 cut(s) 145, 352
DdeI CTNAG 2 cut(s) 112, 222
DpnI GATC 3 cut(s) 15, 180, 321
DpnII GATC 3 cut(s) 13, 178, 319
Eco130I CCWWGG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 213, 244
FaiI YATR 4 cut(s) 211, 215, 242, 324
FatI CATG 2 cut(s) 209, 240
FokI GGATG 3 cut(s) 47, 145, 392
FspBI CTAG 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 2 cut(s) 69, 371
Hin1II CATG 2 cut(s) 213, 244
HinfI GANTC 3 cut(s) 35, 250, 280
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 255, 366
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 112, 222
Hsp92II CATG 2 cut(s) 213, 244
Kzo9I GATC 3 cut(s) 13, 178, 319
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 7 cut(s) 50, 77, 87, 119, 155, 173, 209
LweI GCATC 1 cut(s) 123
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 15, 180, 321
MboI GATC 3 cut(s) 13, 178, 319
MboII GAAGA 1 cut(s) 8
MflI RGATCY 1 cut(s) 13
MluCI AATT 3 cut(s) 51, 95, 164
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 7 cut(s) 80, 199, 225, 238, 325, 360, 370
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 3 cut(s) 13, 178, 319
NlaIII CATG 2 cut(s) 213, 244
NspI RCATGY 1 cut(s) 213
OliI CACNNNNGTG 1 cut(s) 190
PfeI GAWTC 2 cut(s) 35, 250
PflMI CCANNNNNTGG 1 cut(s) 64
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 2 cut(s) 67, 369
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 2 cut(s) 146, 353
RsaNI GTAC 2 cut(s) 145, 352
RseI CAYNNNNRTG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 3 cut(s) 13, 178, 319
Sau96I GGNCC 2 cut(s) 67, 369
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 65
SetI ASST 3 cut(s) 105, 204, 353
SfaNI GCATC 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 190
Sse9I AATT 3 cut(s) 51, 95, 164
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 372
TaqI TCGA 3 cut(s) 30, 204, 388
TasI AATT 3 cut(s) 51, 95, 164
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 2 cut(s) 35, 250
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 2 cut(s) 192, 290
TspDTI ATGAA 2 cut(s) 229, 230
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 2 cut(s) 192, 290
Van91I CCANNNNNTGG 1 cut(s) 64
XceI RCATGY 1 cut(s) 213
XspI CTAG 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.