RchiOBHm_Chr5g0045621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000497
Physical Location & Seq
Reverse (-)
41649999 .. 41652178
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32368

Sequence Viewer

Length: 516 bp
ATGGATCCTCTTCCTCGAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTCGGCCTCCCTGTGTCCGCACAGACTCTCGAATTGAAGAAGCTCCGGTGCTCGGAAGCGGCGAAGCGACGGATCGAAGGAGAAGGATCAAGCTCTGGACCGATTTGGTTGGGTTGCTTATGTGTTTTTGGTTTCAGGCCGAGGCTTTGTGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTACGGGTCCAAGAGTTGGAGGATGAATTGAGGGAAGAATTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATTGACCAAAGATGAGACTGGGGCGGCATGTGCATTTTGGGAGGCCAATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.33

Weight (kDa)

4.7

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 1 cut(s) 24
AciI CCGC 3 cut(s) 75, 116, 485
AclWI GGATC 3 cut(s) 12, 137, 151
AcuI CTGAAG 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 109, 340
AgsI TTSAA 3 cut(s) 94, 367, 431
AhlI ACTAGT 1 cut(s) 439
AluBI AGCT 3 cut(s) 100, 150, 513
AluI AGCT 3 cut(s) 100, 150, 513
Alw21I GWGCWC 2 cut(s) 110, 251
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 3 cut(s) 12, 137, 151
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 4 cut(s) 61, 194, 309, 504
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 155, 309, 331
AsuHPI GGTGA 2 cut(s) 229, 414
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 2 cut(s) 155, 331
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 110, 251
BccI CCATC 1 cut(s) 274
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 470
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 1 cut(s) 440
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 2 cut(s) 117, 486
BlsI GCNGC 2 cut(s) 118, 487
Bme18I GGWCC 2 cut(s) 155, 331
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 3 cut(s) 155, 309, 331
BmiI GGNNCC 2 cut(s) 6, 332
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 58, 197, 312
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 340
Bse1I ACTGG 1 cut(s) 484
BseDI CCNNGG 3 cut(s) 58, 197, 312
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 109, 340
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 484
BshFI GGCC 4 cut(s) 63, 196, 311, 506
BsiHKAI GWGCWC 2 cut(s) 110, 251
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 109, 340
BsmAI GTCTC 1 cut(s) 470
BsnI GGCC 4 cut(s) 63, 196, 311, 506
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 2 cut(s) 110, 251
Bsp143I GATC 4 cut(s) 4, 129, 143, 259
BspACI CCGC 3 cut(s) 75, 116, 485
BspANI GGCC 4 cut(s) 63, 196, 311, 506
BspCNI CTCAG 1 cut(s) 313
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 6, 332
BspPI GGATC 3 cut(s) 12, 137, 151
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 3 cut(s) 58, 197, 312
BssMI GATC 4 cut(s) 4, 129, 143, 259
BssT1I CCWWGG 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 15, 426
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 4 cut(s) 7, 132, 146, 262
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 4 cut(s) 4, 129, 143, 259
BstMWI GCNNNNNNNGC 3 cut(s) 208, 317, 491
BstNSI RCATGY 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 4 cut(s) 63, 196, 311, 506
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 251
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 155, 309, 331
CviAII CATG 2 cut(s) 263, 489
DdeI CTNAG 1 cut(s) 321
DpnI GATC 4 cut(s) 6, 131, 145, 261
DpnII GATC 4 cut(s) 4, 129, 143, 259
Eam1104I CTCTTC 2 cut(s) 15, 426
EarI CTCTTC 2 cut(s) 15, 426
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 155, 331
Eco57I CTGAAG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 2 cut(s) 266, 492
FaiI YATR 4 cut(s) 178, 258, 264, 490
FatI CATG 2 cut(s) 262, 488
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 117, 486
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 117, 486
FspAI RTGCGCAY 1 cut(s) 210
FspBI CTAG 1 cut(s) 440
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 117, 486
HaeIII GGCC 4 cut(s) 63, 196, 311, 506
HapII CCGG 1 cut(s) 103
HhaI GCGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 266, 492
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 5 cut(s) 41, 82, 220, 404, 446
HpaII CCGG 1 cut(s) 103
HphI GGTGA 2 cut(s) 229, 414
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 38, 112, 290
Hpy188III TCNNGA 4 cut(s) 17, 86, 153, 263
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 2 cut(s) 29, 129
HpyAV CCTTC 4 cut(s) 128, 134, 235, 410
HpyCH4V TGCA 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 317, 491
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 2 cut(s) 266, 492
HspAI GCGC 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 4 cut(s) 4, 129, 143, 259
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 81, 116, 138, 178, 200, 317, 438, 465
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 440
MaeIII GTNAC 2 cut(s) 227, 324
MalI GATC 4 cut(s) 6, 131, 145, 261
MboI GATC 4 cut(s) 4, 129, 143, 259
MboII GAAGA 3 cut(s) 106, 371, 443
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 110, 251
MluCI AATT 3 cut(s) 89, 350, 362
MlyI GAGTC 4 cut(s) 50, 76, 229, 455
MmeI TCCRAC 2 cut(s) 216, 321
MspI CCGG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 208, 317, 491
NdeII GATC 4 cut(s) 4, 129, 143, 259
NlaIII CATG 2 cut(s) 266, 492
NlaIV GGNNCC 2 cut(s) 6, 332
NmeAIII GCCGAG 2 cut(s) 39, 222
NsbI TGCGCA 1 cut(s) 210
NspI RCATGY 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 15
PagI TCATGA 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PfeI GAWTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 2 cut(s) 118, 487
PleI GAGTC 4 cut(s) 49, 76, 228, 454
PpsI GAGTC 4 cut(s) 49, 76, 228, 454
PspN4I GGNNCC 2 cut(s) 6, 332
PspPI GGNCC 3 cut(s) 155, 309, 331
PsuI RGATCY 1 cut(s) 4
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 2 cut(s) 117, 486
Sau3AI GATC 4 cut(s) 4, 129, 143, 259
Sau96I GGNCC 3 cut(s) 155, 309, 331
SchI GAGTC 4 cut(s) 50, 76, 229, 455
SduI GDGCHC 2 cut(s) 110, 251
SetI ASST 4 cut(s) 102, 152, 427, 515
SfaNI GCATC 1 cut(s) 220
Sfr274I CTCGAG 1 cut(s) 15
SinI GGWCC 2 cut(s) 155, 331
SlaI CTCGAG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 3 cut(s) 89, 350, 362
SsiI CCGC 3 cut(s) 75, 116, 485
SspMI CTAG 1 cut(s) 440
StyI CCWWGG 1 cut(s) 312
TaqI TCGA 5 cut(s) 16, 24, 44, 87, 132
TaqII GACCGA 2 cut(s) 172, 282
TasI AATT 3 cut(s) 89, 350, 362
TauI GCSGC 2 cut(s) 119, 488
TfiI GAWTC 1 cut(s) 404
TscAI CASTG 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 363, 396, 396
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 155, 331
XceI RCATGY 1 cut(s) 492
XhoI CTCGAG 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.