Rmu_sc0006651.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006651.1
OG0000497
Physical Location & Seq
Forward (+)
35118 .. 37560
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006651.1_g000010.1.cds

Sequence Viewer

Length: 495 bp
atggatcctcttccgcaagaagtcgacgattacatcagagagtcgattgaccacaccctcggcctccccgtgtccgcacagactctcgaattgaagctccgctgctcggaagccgcgaagcgacggctgcgcgaccagtacacggccgaggctttgaggaagtttgtggaggagaatcagagactagcggcagagtgtgcgcatctggtgagtcagtgtaacaagttggagaaggagtgctggctctgtgatcatgaccgagaggctttgatggatttcggaaacgaggcagaccagagggccaaggaggctgagtttcgggtccaagagttggaggatgaattgaagttttacaagaatgaatacgagaggctttcggttgattcatctgctgaaggctcacctgttgaagagaaactagtggagtctgttttagcaacatcgaccaaagatgagactggggcggcatgtgcaattttggaggccaatagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.66

Weight (kDa)

4.6

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 201
AccB7I CCANNNNNTGG 1 cut(s) 331
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 116, 132
AciI CCGC 6 cut(s) 14, 75, 100, 114, 188, 464
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 106, 142, 331
AgsI TTSAA 3 cut(s) 94, 346, 410
AhlI ACTAGT 1 cut(s) 418
AluBI AGCT 2 cut(s) 97, 492
AluI AGCT 2 cut(s) 97, 492
Alw26I GTCTC 2 cut(s) 175, 449
AlwI GGATC 1 cut(s) 12
AoxI GGCC 4 cut(s) 61, 144, 300, 483
ApeKI GCWGC 2 cut(s) 102, 127
AspLEI GCGC 2 cut(s) 132, 202
AspS9I GGNCC 2 cut(s) 300, 322
AsuHPI GGTGA 2 cut(s) 220, 393
AvaII GGWCC 1 cut(s) 322
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 89, 114
BccI CCATC 1 cut(s) 265
BceAI ACGGC 2 cut(s) 140, 159
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 175, 449
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 2 cut(s) 185, 419
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 5 cut(s) 103, 114, 128, 189, 465
BlsI GCNGC 5 cut(s) 104, 115, 129, 190, 466
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 300, 322
BmiI GGNNCC 2 cut(s) 6, 323
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 468
BsaJI CCNNGG 3 cut(s) 58, 147, 303
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 299, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 142, 331
Bse1I ACTGG 2 cut(s) 136, 463
BseDI CCNNGG 3 cut(s) 58, 147, 303
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 3 cut(s) 106, 142, 331
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 136, 463
BseRI GAGGAG 1 cut(s) 185
BseX3I CGGCCG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 89, 114
Bsh1236I CGCG 2 cut(s) 116, 132
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 4 cut(s) 63, 146, 302, 485
BsiEI CGRYCG 1 cut(s) 147
BslI CCNNNNNNNGG 3 cut(s) 106, 142, 331
BsmAI GTCTC 2 cut(s) 175, 449
BsnI GGCC 4 cut(s) 63, 146, 302, 485
Bsp143I GATC 2 cut(s) 4, 250
BspACI CCGC 6 cut(s) 14, 75, 100, 114, 188, 464
BspANI GGCC 4 cut(s) 63, 146, 302, 485
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 2 cut(s) 116, 132
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 6, 323
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 2 cut(s) 136, 463
BssECI CCNNGG 3 cut(s) 58, 147, 303
BssMI GATC 2 cut(s) 4, 250
BssT1I CCWWGG 1 cut(s) 303
Bst6I CTCTTC 2 cut(s) 15, 405
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 2 cut(s) 116, 132
BstHHI GCGC 2 cut(s) 132, 202
BstKTI GATC 2 cut(s) 7, 253
BstMAI GTCTC 2 cut(s) 175, 449
BstMBI GATC 2 cut(s) 4, 250
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 127, 197, 308, 470
BstNSI RCATGY 1 cut(s) 471
BstUI CGCG 2 cut(s) 116, 132
BstV1I GCAGC 2 cut(s) 89, 114
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 144
BsuRI GGCC 4 cut(s) 63, 146, 302, 485
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 242
CciI TCATGA 1 cut(s) 253
CfoI GCGC 2 cut(s) 132, 202
Cfr13I GGNCC 2 cut(s) 300, 322
Csp6I GTAC 1 cut(s) 139
CviAII CATG 2 cut(s) 254, 468
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 312
DpnI GATC 2 cut(s) 6, 252
DpnII GATC 2 cut(s) 4, 250
EaeI YGGCCR 1 cut(s) 144
EagI CGGCCG 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 15, 405
EarI CTCTTC 2 cut(s) 15, 405
EclXI CGGCCG 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 322
Eco52I CGGCCG 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 2 cut(s) 257, 471
FaiI YATR 2 cut(s) 255, 469
FatI CATG 2 cut(s) 253, 467
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 103, 114, 128, 189, 465
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 103, 114, 128, 189, 465
FspAI RTGCGCAY 1 cut(s) 201
FspBI CTAG 2 cut(s) 185, 419
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 2 cut(s) 131, 201
GluI GCNGC 5 cut(s) 103, 114, 128, 189, 465
HaeIII GGCC 4 cut(s) 63, 146, 302, 485
HhaI GCGC 2 cut(s) 132, 202
Hin1II CATG 2 cut(s) 257, 471
Hin6I GCGC 2 cut(s) 130, 200
HinP1I GCGC 2 cut(s) 130, 200
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 6 cut(s) 41, 82, 175, 211, 383, 425
HphI GGTGA 2 cut(s) 220, 393
Hpy166II GTNNAC 2 cut(s) 25, 141
Hpy188I TCNGA 4 cut(s) 38, 109, 180, 281
Hpy188III TCNNGA 2 cut(s) 86, 254
Hpy8I GTNNAC 2 cut(s) 25, 141
Hpy99I CGWCG 2 cut(s) 29, 126
HpyAV CCTTC 2 cut(s) 226, 389
HpyCH4V TGCA 1 cut(s) 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 197, 308, 470
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 2 cut(s) 257, 471
HspAI GCGC 2 cut(s) 130, 200
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 2 cut(s) 4, 250
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 6 cut(s) 149, 191, 226, 308, 417, 444
Lsp1109I GCAGC 2 cut(s) 89, 114
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 185, 419
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 6, 252
MboI GATC 2 cut(s) 4, 250
MboII GAAGA 1 cut(s) 422
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 89, 341, 474
MlyI GAGTC 4 cut(s) 50, 76, 220, 434
MmeI TCCRAC 2 cut(s) 207, 312
MspA1I CMGCKG 1 cut(s) 102
MvnI CGCG 2 cut(s) 116, 132
MwoI GCNNNNNNNGC 4 cut(s) 127, 197, 308, 470
NdeII GATC 2 cut(s) 4, 250
NlaIII CATG 2 cut(s) 257, 471
NlaIV GGNNCC 2 cut(s) 6, 323
NmeAIII GCCGAG 2 cut(s) 39, 172
NsbI TGCGCA 1 cut(s) 201
NspI RCATGY 1 cut(s) 471
PagI TCATGA 1 cut(s) 253
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 113
PfeI GAWTC 2 cut(s) 175, 383
PflMI CCANNNNNTGG 1 cut(s) 331
PkrI GCNGC 5 cut(s) 104, 115, 129, 190, 466
PleI GAGTC 4 cut(s) 49, 76, 219, 433
PpsI GAGTC 4 cut(s) 49, 76, 219, 433
PspN4I GGNNCC 2 cut(s) 6, 323
PspPI GGNCC 2 cut(s) 300, 322
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 5 cut(s) 103, 114, 128, 189, 465
Sau3AI GATC 2 cut(s) 4, 250
Sau96I GGNCC 2 cut(s) 300, 322
SchI GAGTC 4 cut(s) 50, 76, 220, 434
SetI ASST 3 cut(s) 99, 406, 494
SfaNI GCATC 1 cut(s) 211
SinI GGWCC 1 cut(s) 322
SpeI ACTAGT 1 cut(s) 418
Sse9I AATT 3 cut(s) 89, 341, 474
SsiI CCGC 6 cut(s) 14, 75, 100, 114, 188, 464
SspMI CTAG 2 cut(s) 185, 419
StyI CCWWGG 1 cut(s) 303
TaqI TCGA 4 cut(s) 24, 44, 87, 443
TaqII GACCGA 1 cut(s) 273
TasI AATT 3 cut(s) 89, 341, 474
TatI WGTACW 1 cut(s) 138
TauI GCSGC 3 cut(s) 116, 191, 467
TfiI GAWTC 2 cut(s) 175, 383
TscAI CASTG 1 cut(s) 221
TseI GCWGC 2 cut(s) 102, 127
TspDTI ATGAA 3 cut(s) 354, 375, 375
TspRI CASTG 1 cut(s) 221
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 322
XceI RCATGY 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 2 cut(s) 185, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.