Rh5BG313100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000497
Physical Location & Seq
Reverse (-)
41527162 .. 41527980
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG313100.1

Sequence Viewer

Length: 411 bp
ATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGTAACACTTGAGAAGGATGAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGACGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAATAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGTCAAACAAGCGAAAATCTAGCTCTAAGGTGATGAGCAGCAGCCCGATTCAGGGGAAGATCGATTTCAGTGACCAAGAATCATCAGCAAGACAACCTCTCTCACCGTTGCGTTGTAACTCCCCTAACTCAAGACTGCATAAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.5

Weight (kDa)

9.71

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 50, 150
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 310, 311
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 2 cut(s) 179, 282
AluI AGCT 2 cut(s) 179, 282
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 297, 300
Asp700I GAANNNNTTC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 301, 354
AsuII TTCGAA 1 cut(s) 153
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BbvI GCAGC 2 cut(s) 309, 312
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 4
BfaI CTAG 2 cut(s) 44, 279
BisI GCNGC 2 cut(s) 298, 301
BlsI GCNGC 2 cut(s) 299, 302
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 3 cut(s) 34, 107, 373
Bsa29I ATCGAT 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 311
BseCI ATCGAT 1 cut(s) 321
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 310, 311
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 309, 312
BshFI GGCC 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 310, 311
BsnI GGCC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 2 cut(s) 111, 318
BspACI CCGC 1 cut(s) 205
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 43
BspDI ATCGAT 1 cut(s) 321
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 153
BssMI GATC 2 cut(s) 111, 318
BssNI GRCGYC 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 51, 107, 285
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 2 cut(s) 114, 321
BstMBI GATC 2 cut(s) 111, 318
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 309, 312
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 321
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 5 cut(s) 12, 19, 179, 282, 303
CviKI_1 RGCY 5 cut(s) 12, 19, 179, 282, 303
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 51, 107, 285
DpnI GATC 2 cut(s) 113, 320
DpnII GATC 2 cut(s) 111, 318
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 50, 150
FaiI YATR 2 cut(s) 243, 399
Fnu4HI GCNGC 2 cut(s) 298, 301
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 298, 301
FspBI CTAG 2 cut(s) 44, 279
GluI GCNGC 2 cut(s) 298, 301
HaeIII GGCC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 138
HinfI GANTC 2 cut(s) 307, 338
HphI GGTGA 2 cut(s) 301, 354
Hpy188I TCNGA 2 cut(s) 69, 232
Hpy188III TCNNGA 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 3 cut(s) 51, 107, 285
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 111, 318
LpnPI CCDG 2 cut(s) 210, 296
Lsp1109I GCAGC 2 cut(s) 309, 312
MaeI CTAG 2 cut(s) 44, 279
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 79, 329, 374
MalI GATC 2 cut(s) 113, 320
MboI GATC 2 cut(s) 111, 318
MboII GAAGA 6 cut(s) 82, 110, 110, 143, 167, 328
MluCI AATT 2 cut(s) 143, 220
MnlI CCTC 3 cut(s) 9, 127, 366
MroXI GAANNNNTTC 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 403
NdeII GATC 2 cut(s) 111, 318
NmuCI GTSAC 1 cut(s) 329
NspV TTCGAA 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 307, 338
PkrI GCNGC 2 cut(s) 299, 302
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 246
SatI GCNGC 2 cut(s) 298, 301
Sau3AI GATC 2 cut(s) 111, 318
SetI ASST 5 cut(s) 141, 181, 284, 291, 358
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 3 cut(s) 13, 86, 388
SmoI CTYRAG 3 cut(s) 13, 86, 388
Sse9I AATT 2 cut(s) 143, 220
SsiI CCGC 1 cut(s) 205
SspMI CTAG 2 cut(s) 44, 279
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 153, 321
TasI AATT 2 cut(s) 143, 220
TfiI GAWTC 2 cut(s) 307, 338
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 297, 300
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 111, 189
TspRI CASTG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 2 cut(s) 44, 279
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.