MD08G1190200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000497
Physical Location & Seq
Reverse (-)
23982192 .. 23983450
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1190200.v1.1.491

Sequence Viewer

Length: 504 bp
ATGAATGCACAAGCTTTAAGGAAGTTCGTTGAGGAGAATCAGAGATTGGTGTCGGAGTGTGCGCATCTAATGACTCAGTGCAACAAATGGGAGAGGGAGTGCTCACTCTACGATCATGACCTAGAGGCTCTAATGGATTTTGGGAATGAGGCTGATCAGCGTGCTAAGGAGGCCAAGATTCGTGATCAGGAGTTGGAGGACGAAGTCAGAAAGTTGAGGGATGAATTGGCGTTATTTAAGTACAAAATGGAGATGAATTCGGCACTTGAGAAGGATAAGGAACATCTTATGATCAATCTTCATATGGCTGATGAGGAGGTCAAATTGCTTTTTGAAGAAAACAAAGTCCTAGATATGGAGAATAAAAGATTACTGAGGTTGTACCAGAAGGAAAGAAACCATTCTGCTTCTGGTGGAAAACATACTGACAGTGCATCAGCGAAGGTGGGACAAAGGGAAAATAACAGCTTTGACTCATTTATTCTTTATGTTGGTCTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.65

Weight (kDa)

5.34

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 63
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 2 cut(s) 242, 383
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 1 cut(s) 335
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 2 cut(s) 14, 468
AluI AGCT 2 cut(s) 14, 468
Alw21I GWGCWC 1 cut(s) 104
AoxI GGCC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 400
AspLEI GCGC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 104
BclI TGATCA 3 cut(s) 154, 184, 291
BfaI CTAG 2 cut(s) 122, 350
BmsI GCATC 2 cut(s) 73, 443
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 89, 365
BseRI GAGGAG 2 cut(s) 47, 329
BshFI GGCC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 104
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 462
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 4 cut(s) 112, 154, 184, 291
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 88, 366
BspHI TCATGA 1 cut(s) 115
BssMI GATC 4 cut(s) 112, 154, 184, 291
Bst4CI ACNGT 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 3 cut(s) 75, 165, 374
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 4 cut(s) 115, 157, 187, 294
BstMBI GATC 4 cut(s) 112, 154, 184, 291
BstMWI GCNNNNNNNGC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 83, 436
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 241, 382
CviAII CATG 1 cut(s) 116
CviJI RGCY 6 cut(s) 14, 128, 152, 173, 308, 468
CviKI_1 RGCY 6 cut(s) 14, 128, 152, 173, 308, 468
CviQI GTAC 2 cut(s) 241, 382
DdeI CTNAG 3 cut(s) 75, 165, 374
DpnI GATC 4 cut(s) 114, 156, 186, 293
DpnII GATC 4 cut(s) 112, 154, 184, 291
EcoRI GAATTC 1 cut(s) 256
FaeI CATG 1 cut(s) 119
FaiI YATR 7 cut(s) 117, 290, 303, 305, 356, 423, 489
FaqI GGGAC 1 cut(s) 462
FatI CATG 1 cut(s) 115
FauNDI CATATG 1 cut(s) 303
FbaI TGATCA 3 cut(s) 154, 184, 291
FokI GGATG 1 cut(s) 233
FspAI RTGCGCAY 1 cut(s) 63
FspBI CTAG 2 cut(s) 122, 350
FspI TGCGCA 1 cut(s) 63
GlaI GCGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 173
HhaI GCGC 1 cut(s) 64
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 4 cut(s) 37, 73, 178, 473
Hpy188I TCNGA 3 cut(s) 42, 55, 209
Hpy188III TCNNGA 3 cut(s) 116, 182, 188
HpyAV CCTTC 3 cut(s) 265, 382, 436
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 8, 81, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 3 cut(s) 75, 165, 374
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 1 cut(s) 62
Ksp22I TGATCA 3 cut(s) 154, 184, 291
Kzo9I GATC 4 cut(s) 112, 154, 184, 291
LpnPI CCDG 3 cut(s) 173, 396, 398
LweI GCATC 2 cut(s) 73, 443
MaeI CTAG 2 cut(s) 122, 350
MalI GATC 4 cut(s) 114, 156, 186, 293
MboI GATC 4 cut(s) 112, 154, 184, 291
MboII GAAGA 2 cut(s) 290, 347
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 3 cut(s) 224, 256, 323
MlyI GAGTC 2 cut(s) 67, 467
MmeI TCCRAC 2 cut(s) 33, 174
MroXI GAANNNNTTC 1 cut(s) 400
MseI TTAA 2 cut(s) 17, 237
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeI CATATG 1 cut(s) 303
NdeII GATC 4 cut(s) 112, 154, 184, 291
NlaIII CATG 1 cut(s) 119
NsbI TGCGCA 1 cut(s) 63
PagI TCATGA 1 cut(s) 115
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 37, 178
PflFI GACNNNGTC 1 cut(s) 203
PleI GAGTC 2 cut(s) 67, 467
PpsI GAGTC 2 cut(s) 67, 467
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 2 cut(s) 242, 383
RsaNI GTAC 2 cut(s) 241, 382
SaqAI TTAA 2 cut(s) 17, 237
Sau3AI GATC 4 cut(s) 112, 154, 184, 291
SchI GAGTC 2 cut(s) 67, 467
SduI GDGCHC 1 cut(s) 104
SetI ASST 6 cut(s) 16, 123, 321, 380, 447, 470
SfaNI GCATC 2 cut(s) 73, 443
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 3 cut(s) 224, 256, 323
SspMI CTAG 2 cut(s) 122, 350
TaaI ACNGT 1 cut(s) 431
TasI AATT 3 cut(s) 224, 256, 323
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 2 cut(s) 37, 178
Tru1I TTAA 2 cut(s) 17, 237
Tru9I TTAA 2 cut(s) 17, 237
TscAI CASTG 2 cut(s) 83, 436
TspDTI ATGAA 4 cut(s) 17, 237, 269, 290
TspRI CASTG 2 cut(s) 83, 436
Tth111I GACNNNGTC 1 cut(s) 203
XapI RAATTY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 400
XspI CTAG 2 cut(s) 122, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.