AT4G09060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000497
Physical Location & Seq
Reverse (-)
5797613 .. 5800383
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09060.2

Sequence Viewer

Length: 1026 bp
ATGCGGAGCGAGAGAATTGATTCAGATGAAGCAGAAACAAAATCGAGAACAAATCTCTCGCAAGAAGTCGAAGAATATATCAAAGATACAATTGATCATTCTTTAGGTCTTCCGATCTCCATGGAATCTCTTCAGAAGAAGCTTTATACGGCTGAAGAATCTCAACGCCGTCTTCGCGAACAGTATCAGGGTCTGATTTCGCGATTAAAGGAGAAAGATCATGTAATCGATCGTGTTAGGTCTGAAGCGAGTATGAATGCGCAAGCGTTGAAGAAGTTTGTTGAAGAGAATCAGAAATTGGCTAGTGAGTGTGGGAATTTGTTGAGTCAGTGTAAGAAATTGGAGAAAGAGTGTTTGCTTTATCATCAAGATCGTGATGCGTTGATGGAGTTTGGGAATGAATCTGATGAGAGAGCTAGAGAAGCAGAAGCTAGGGTTCGTGAATTGGAGGATGAAATTGGAAGAATGTCTGAGGAAATGCAGAGATTTAAGCGTCAAATCGGAGATGGTGAAGTTGAAAACTGTACTACACCGTTAGAAGAAGATTTGCTTGATTCAGTTTTGGGATCACTCATAAGCAAAGATGAAACTATAATGGGGCGTCTCTTCTTGGAGGCAAACATCCACGACCAATCGTGCCAAGCCTTGCTGAGCAAGTGGGATCACTTAAAGCCTTCAACGCAAAAGGTTCTTTCTTTAGTTTCAAAGGCAAAGAAATTCGAAAAGGAAAAAGAATGCATCATCATGAATCTCGCTAAAGCTGAGCAAGAGGTGGAACTTGTGAGCACGCTAAACCGAAAGCTGGATAAAGAAAATCGTAAGTTGCTAAGGCAACAACAAAGCCCTCTTTGCTCCGCAGACAAGAACCGAAACAGCGCATCTGCAAAGTCAAACAAGAGAAAGAGTCCGAAGACGATGAGTAGCCCGGTCGAGAAGAGGCTTGAGTTTAGCAGTCCAGAAATTAGCAGGAAGCCTCTATCACCTGTATGGAATAACTCACCAGATTCTAAGATGAACAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

39.26

Weight (kDa)

6.13

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 261
AccII CGCG 2 cut(s) 177, 202
AciI CCGC 2 cut(s) 4, 855
AclWI GGATC 2 cut(s) 574, 669
AcsI RAATTY 2 cut(s) 316, 716
AcuI CTGAAG 3 cut(s) 116, 174, 264
AcyI GRCGYC 1 cut(s) 601
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 1 cut(s) 802
AgsI TTSAA 5 cut(s) 271, 284, 518, 678, 705
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 5 cut(s) 142, 416, 431, 761, 802
AluI AGCT 5 cut(s) 142, 416, 431, 761, 802
Alw21I GWGCWC 1 cut(s) 788
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 2 cut(s) 574, 669
AlwNI CAGNNNCTG 1 cut(s) 193
ApoI RAATTY 2 cut(s) 316, 716
Asp700I GAANNNNTTC 2 cut(s) 19, 129
AspLEI GCGC 2 cut(s) 262, 878
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 3 cut(s) 521, 972, 990
AsuII TTCGAA 1 cut(s) 720
BbsI GAAGAC 3 cut(s) 101, 164, 917
Bbv12I GWGCWC 1 cut(s) 788
BccI CCATC 2 cut(s) 379, 500
BceAI ACGGC 2 cut(s) 153, 165
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 3 cut(s) 303, 417, 432
BlpI GCTNAGC 2 cut(s) 650, 762
Bme1390I CCNGG 1 cut(s) 926
BmrFI CCNGG 1 cut(s) 926
BmsI GCATC 3 cut(s) 367, 747, 887
BpiI GAAGAC 3 cut(s) 101, 164, 917
Bpu10I CCTNAGC 1 cut(s) 827
Bpu1102I GCTNAGC 2 cut(s) 650, 762
Bpu14I TTCGAA 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 1 cut(s) 926
Bsa29I ATCGAT 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 601
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 802
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 457, 621
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMII CTCAG 3 cut(s) 462, 641, 753
Bsh1236I CGCG 2 cut(s) 177, 202
Bsh1285I CGRYCG 2 cut(s) 232, 930
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 2 cut(s) 232, 930
BsiHKAI GWGCWC 1 cut(s) 788
BsiSI CCGG 1 cut(s) 926
BslI CCNNNNNNNGG 1 cut(s) 802
BsmAI GTCTC 1 cut(s) 608
BsmBI CGTCTC 1 cut(s) 608
BsmI GAATGC 2 cut(s) 262, 740
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 788
Bsp143I GATC 7 cut(s) 94, 114, 217, 229, 370, 566, 661
Bsp1720I GCTNAGC 2 cut(s) 650, 762
Bsp19I CCATGG 1 cut(s) 120
Bsp68I TCGCGA 2 cut(s) 177, 202
BspACI CCGC 2 cut(s) 4, 855
BspCNI CTCAG 3 cut(s) 463, 642, 754
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 2 cut(s) 177, 202
BspHI TCATGA 1 cut(s) 744
BspPI GGATC 2 cut(s) 574, 669
BspT104I TTCGAA 1 cut(s) 720
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 7 cut(s) 94, 114, 217, 229, 370, 566, 661
BssNI GRCGYC 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 183, 524, 534
Bst6I CTCTTC 4 cut(s) 135, 279, 611, 929
BstACI GRCGYC 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 720
BstC8I GCNNGC 2 cut(s) 264, 788
BstDEI CTNAG 5 cut(s) 471, 650, 762, 827, 1008
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 457, 621
BstFNI CGCG 2 cut(s) 177, 202
BstHHI GCGC 2 cut(s) 262, 878
BstKTI GATC 7 cut(s) 97, 117, 220, 232, 373, 569, 664
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 7 cut(s) 94, 114, 217, 229, 370, 566, 661
BstMCI CGRYCG 2 cut(s) 232, 930
BstMWI GCNNNNNNNGC 4 cut(s) 174, 422, 679, 849
BstSCI CCNGG 1 cut(s) 924
BstUI CGCG 2 cut(s) 177, 202
BstV2I GAAGAC 3 cut(s) 101, 164, 917
Bsu15I ATCGAT 1 cut(s) 228
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 2 cut(s) 457, 621
BtsIMutI CAGTG 1 cut(s) 335
BtuMI TCGCGA 2 cut(s) 177, 202
Cac8I GCNNGC 2 cut(s) 264, 788
CaiI CAGNNNCTG 1 cut(s) 193
CciI TCATGA 1 cut(s) 744
CfoI GCGC 2 cut(s) 262, 878
ClaI ATCGAT 1 cut(s) 228
CseI GACGC 2 cut(s) 482, 590
Csp6I GTAC 1 cut(s) 525
CviAII CATG 3 cut(s) 121, 221, 745
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 5 cut(s) 471, 650, 762, 827, 1008
DpnI GATC 7 cut(s) 96, 116, 219, 231, 372, 568, 663
DpnII GATC 7 cut(s) 94, 114, 217, 229, 370, 566, 661
Eam1104I CTCTTC 4 cut(s) 135, 279, 611, 929
EarI CTCTTC 4 cut(s) 135, 279, 611, 929
Eco130I CCWWGG 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 116, 174, 264
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 608
FaeI CATG 3 cut(s) 124, 224, 748
FaiI YATR 9 cut(s) 78, 122, 147, 222, 254, 575, 593, 746, 988
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FatI CATG 3 cut(s) 120, 220, 744
FbaI TGATCA 1 cut(s) 94
FokI GGATG 2 cut(s) 464, 608
FspBI CTAG 3 cut(s) 303, 417, 432
FspI TGCGCA 1 cut(s) 261
GlaI GCGC 2 cut(s) 261, 877
HapII CCGG 1 cut(s) 926
HgaI GACGC 2 cut(s) 482, 590
HhaI GCGC 2 cut(s) 262, 878
Hin1I GRCGYC 1 cut(s) 601
Hin1II CATG 3 cut(s) 124, 224, 748
Hin6I GCGC 2 cut(s) 260, 876
HinP1I GCGC 2 cut(s) 260, 876
HindIII AAGCTT 1 cut(s) 140
HpaII CCGG 1 cut(s) 926
HphI GGTGA 3 cut(s) 521, 972, 990
Hpy188III TCNNGA 9 cut(s) 45, 176, 201, 368, 374, 440, 745, 931, 956
HpyAV CCTTC 1 cut(s) 684
HpyCH4III ACNGT 3 cut(s) 183, 524, 534
HpyCH4V TGCA 3 cut(s) 481, 738, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 422, 679, 849
HpyF3I CTNAG 5 cut(s) 471, 650, 762, 827, 1008
Hsp92I GRCGYC 1 cut(s) 601
Hsp92II CATG 3 cut(s) 124, 224, 748
HspAI GCGC 2 cut(s) 260, 876
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 7 cut(s) 94, 114, 217, 229, 370, 566, 661
LmnI GCTCC 2 cut(s) 6, 857
LpnPI CCDG 7 cut(s) 173, 788, 939, 952, 969, 996, 1014
LweI GCATC 3 cut(s) 367, 747, 887
MaeI CTAG 3 cut(s) 303, 417, 432
MalI GATC 7 cut(s) 96, 116, 219, 231, 372, 568, 663
MboI GATC 7 cut(s) 94, 114, 217, 229, 370, 566, 661
MfeI CAATTG 2 cut(s) 90, 1021
MhlI GDGCHC 1 cut(s) 788
MlyI GAGTC 2 cut(s) 334, 913
MnlI CCTC 7 cut(s) 442, 466, 607, 763, 855, 930, 984
Mph1103I ATGCAT 1 cut(s) 740
MroXI GAANNNNTTC 2 cut(s) 19, 129
MseI TTAA 3 cut(s) 206, 489, 668
MslI CAYNNNNRTG 2 cut(s) 743, 985
MspI CCGG 1 cut(s) 926
MspR9I CCNGG 1 cut(s) 926
MunI CAATTG 2 cut(s) 90, 1021
Mva1269I GAATGC 2 cut(s) 262, 740
MvnI CGCG 2 cut(s) 177, 202
MwoI GCNNNNNNNGC 4 cut(s) 174, 422, 679, 849
NciI CCSGG 1 cut(s) 926
NcoI CCATGG 1 cut(s) 120
NdeII GATC 7 cut(s) 94, 114, 217, 229, 370, 566, 661
NlaIII CATG 3 cut(s) 124, 224, 748
NruI TCGCGA 2 cut(s) 177, 202
NsbI TGCGCA 1 cut(s) 261
NsiI ATGCAT 1 cut(s) 740
NspV TTCGAA 1 cut(s) 720
PagI TCATGA 1 cut(s) 744
PctI GAATGC 2 cut(s) 262, 740
PdmI GAANNNNTTC 2 cut(s) 19, 129
PfeI GAWTC 8 cut(s) 20, 125, 158, 289, 401, 554, 748, 1004
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 2 cut(s) 333, 912
PpsI GAGTC 2 cut(s) 333, 912
PstNI CAGNNNCTG 1 cut(s) 193
PvuI CGATCG 1 cut(s) 232
RruI TCGCGA 2 cut(s) 177, 202
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 2 cut(s) 743, 985
SaqAI TTAA 3 cut(s) 206, 489, 668
Sau3AI GATC 7 cut(s) 94, 114, 217, 229, 370, 566, 661
SchI GAGTC 2 cut(s) 334, 913
ScrFI CCNGG 1 cut(s) 926
SduI GDGCHC 1 cut(s) 788
SfaNI GCATC 3 cut(s) 367, 747, 887
SfuI TTCGAA 1 cut(s) 720
SmiMI CAYNNNNRTG 2 cut(s) 743, 985
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
SsiI CCGC 2 cut(s) 4, 855
SspMI CTAG 3 cut(s) 303, 417, 432
StyD4I CCNGG 1 cut(s) 924
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 3 cut(s) 183, 524, 534
TaqI TCGA 5 cut(s) 44, 69, 228, 720, 930
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 8 cut(s) 20, 125, 158, 289, 401, 554, 748, 1004
Tru1I TTAA 3 cut(s) 206, 489, 668
Tru9I TTAA 3 cut(s) 206, 489, 668
TscAI CASTG 1 cut(s) 335
TspDTI ATGAA 6 cut(s) 42, 269, 414, 468, 600, 761
TspRI CASTG 1 cut(s) 335
XapI RAATTY 2 cut(s) 316, 716
XmnI GAANNNNTTC 2 cut(s) 19, 129
XspI CTAG 3 cut(s) 303, 417, 432
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.