Rmu_sc0001371.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001371.1
OG0000497
Physical Location & Seq
Forward (+)
109649 .. 112799
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001371.1_g000020.1.cds

Sequence Viewer

Length: 1020 bp
atggatccgcttccacaagaagtcgacgattacatcagagagtcgattgaccacacccttggcctccccgtgtccacgcagactctcgagttgaagctccggtgctcggaagccgcgaggcgacggctgcgcgaccagtacacggttctactcgccaaattgaaagagaaggatcaagctctggagcgatctagggccgaggcttgtatgaacgctcaggctttgaggaagtttgtggaggagaatcagagactagcggcggagtgtgggcatctggtgagccagtgcaacaagttggagaaggagtgctcgctctatgatcatgaccgagaggctttgatggatttcggaaacgaggcggaccagagggccaaggaggctgagtttcgggtcgaagagttggaggatgaactgggagaattgagggaagagttgaagttttacaagaatgaatacgagaggctttcggttgattcatctgctgatggctcacctgttgaagagaaactagtggagtctgttttagcaacattgaccaaagatgagactggggcggcatgtgcatttttggaggccagtagcggaaatgagtcgtgtcaaaggttgctaaatatgtggaatggcttgaggccgtcatctcaaaaagttctatcactagttgctgagttgaaaacacttcaaaagaataatgaaacacttgagaaggataaagaacatctaaggatcaatcttctttctgctgaagaggaggtcaaattgctttttgaagaaaacaaagtgttagatgaagctaacaaaagattactgaagcagtaccgcaaggaaagaaacaattctggttctgatggaaagcatactgatgtatcaacgaagtcaaacaagcgaaaatctagctctaaggtgatgagctgcagcccgattcaggggaagatcgatttcagtgaccaagaatcagcaagacaacctctctcacccttgcgttgtaactcccctaactcaagactgcataaaaagcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

38.68

Weight (kDa)

5.56

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 116, 132
AciI CCGC 8 cut(s) 8, 114, 257, 260, 359, 554, 582, 817
AclWI GGATC 3 cut(s) 12, 180, 731
AcuI CTGAAG 2 cut(s) 762, 827
AfaI GTAC 2 cut(s) 140, 815
AfiI CCNNNNNNNGG 4 cut(s) 106, 142, 922, 923
AgsI TTSAA 7 cut(s) 94, 163, 436, 500, 670, 680, 767
AhlI ACTAGT 2 cut(s) 508, 655
AluBI AGCT 5 cut(s) 97, 179, 791, 894, 909
AluI AGCT 5 cut(s) 97, 179, 791, 894, 909
Alw21I GWGCWC 2 cut(s) 107, 311
Alw26I GTCTC 2 cut(s) 244, 539
AlwI GGATC 3 cut(s) 12, 180, 731
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 5 cut(s) 61, 195, 369, 573, 629
ApeKI GCWGC 3 cut(s) 127, 909, 912
Asp700I GAANNNNTTC 1 cut(s) 832
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 3 cut(s) 195, 361, 369
AsuHPI GGTGA 4 cut(s) 289, 483, 913, 963
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 361
BaeI ACNNNNGTAYC 2 cut(s) 846, 879
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 107, 311
BbvI GCAGC 3 cut(s) 114, 896, 924
BccI CCATC 3 cut(s) 334, 479, 839
BceAI ACGGC 2 cut(s) 140, 616
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 244, 539
BcuI ACTAGT 2 cut(s) 508, 655
BfaI CTAG 5 cut(s) 192, 254, 509, 656, 891
BfmI CTRYAG 1 cut(s) 910
BglI GCCNNNNNGGC 1 cut(s) 377
BisI GCNGC 6 cut(s) 114, 128, 258, 555, 910, 913
BlsI GCNGC 6 cut(s) 115, 129, 259, 556, 911, 914
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 3 cut(s) 195, 361, 369
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 2 cut(s) 422, 558
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 2 cut(s) 422, 558
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 3 cut(s) 646, 719, 982
Bsa29I ATCGAT 1 cut(s) 933
BsaJI CCNNGG 3 cut(s) 58, 198, 372
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 368, 398
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 142, 922, 923
Bse1I ACTGG 5 cut(s) 136, 283, 417, 553, 576
BseCI ATCGAT 1 cut(s) 933
BseDI CCNNGG 3 cut(s) 58, 198, 372
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 4 cut(s) 106, 142, 922, 923
BseMII CTCAG 3 cut(s) 230, 372, 654
BseNI ACTGG 5 cut(s) 136, 283, 417, 553, 576
BseRI GAGGAG 2 cut(s) 254, 761
BseXI GCAGC 3 cut(s) 114, 896, 924
Bsh1236I CGCG 2 cut(s) 116, 132
BshFI GGCC 5 cut(s) 63, 197, 371, 575, 631
BshVI ATCGAT 1 cut(s) 933
BsiHKAI GWGCWC 2 cut(s) 107, 311
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 4 cut(s) 106, 142, 922, 923
BsmAI GTCTC 2 cut(s) 244, 539
BsnI GGCC 5 cut(s) 63, 197, 371, 575, 631
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 107, 311
Bsp143I GATC 6 cut(s) 4, 172, 188, 319, 723, 930
BspACI CCGC 8 cut(s) 8, 114, 257, 260, 359, 554, 582, 817
BspANI GGCC 5 cut(s) 63, 197, 371, 575, 631
BspCNI CTCAG 3 cut(s) 229, 373, 655
BspDI ATCGAT 1 cut(s) 933
BspFNI CGCG 2 cut(s) 116, 132
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 914
BspPI GGATC 3 cut(s) 12, 180, 731
BsrI ACTGG 5 cut(s) 136, 283, 417, 553, 576
BssECI CCNNGG 3 cut(s) 58, 198, 372
BssMI GATC 6 cut(s) 4, 172, 188, 319, 723, 930
BssT1I CCWWGG 2 cut(s) 58, 372
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 4 cut(s) 390, 423, 495, 738
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 5 cut(s) 216, 381, 663, 719, 897
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 2 cut(s) 116, 132
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 6 cut(s) 7, 175, 191, 322, 726, 933
BstMAI GTCTC 2 cut(s) 244, 539
BstMBI GATC 6 cut(s) 4, 172, 188, 319, 723, 930
BstMWI GCNNNNNNNGC 4 cut(s) 127, 377, 560, 1012
BstNSI RCATGY 1 cut(s) 561
BstSFI CTRYAG 1 cut(s) 910
BstUI CGCG 2 cut(s) 116, 132
BstV1I GCAGC 3 cut(s) 114, 896, 924
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 59
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 933
BsuRI GGCC 5 cut(s) 63, 197, 371, 575, 631
BsuTUI ATCGAT 1 cut(s) 933
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 290, 946
Cac8I GCNNGC 1 cut(s) 311
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 195, 361, 369
ClaI ATCGAT 1 cut(s) 933
Csp6I GTAC 2 cut(s) 139, 814
CviAII CATG 2 cut(s) 323, 558
CviQI GTAC 2 cut(s) 139, 814
DdeI CTNAG 5 cut(s) 216, 381, 663, 719, 897
DpnI GATC 6 cut(s) 6, 174, 190, 321, 725, 932
DpnII GATC 6 cut(s) 4, 172, 188, 319, 723, 930
Eam1104I CTCTTC 4 cut(s) 390, 423, 495, 738
EarI CTCTTC 4 cut(s) 390, 423, 495, 738
EciI GGCGGA 2 cut(s) 275, 374
Eco130I CCWWGG 2 cut(s) 58, 372
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 762, 827
Eco88I CYCGRG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 58, 372
ErhI CCWWGG 2 cut(s) 58, 372
FaeI CATG 2 cut(s) 326, 561
FaiI YATR 7 cut(s) 209, 318, 324, 559, 614, 855, 1008
FatI CATG 2 cut(s) 322, 557
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 6 cut(s) 114, 128, 258, 555, 910, 913
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 6 cut(s) 114, 128, 258, 555, 910, 913
FspBI CTAG 5 cut(s) 192, 254, 509, 656, 891
GlaI GCGC 1 cut(s) 131
GluI GCNGC 6 cut(s) 114, 128, 258, 555, 910, 913
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 5 cut(s) 63, 197, 371, 575, 631
HapII CCGG 1 cut(s) 100
HhaI GCGC 1 cut(s) 132
Hin1II CATG 2 cut(s) 326, 561
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 8 cut(s) 41, 82, 244, 473, 515, 590, 919, 950
HpaII CCGG 1 cut(s) 100
HphI GGTGA 4 cut(s) 289, 483, 913, 963
Hpy166II GTNNAC 3 cut(s) 25, 75, 141
Hpy188I TCNGA 5 cut(s) 38, 109, 249, 350, 844
Hpy188III TCNNGA 4 cut(s) 86, 182, 323, 999
Hpy8I GTNNAC 3 cut(s) 25, 75, 141
Hpy99I CGWCG 2 cut(s) 29, 126
HpyAV CCTTC 3 cut(s) 163, 295, 697
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 288, 563, 912, 1006
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 377, 560, 1012
HpyF3I CTNAG 5 cut(s) 216, 381, 663, 719, 897
Hsp92II CATG 2 cut(s) 326, 561
HspAI GCGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 6 cut(s) 4, 172, 188, 319, 723, 930
LmnI GCTCC 2 cut(s) 102, 184
Lsp1109I GCAGC 3 cut(s) 114, 896, 924
LweI GCATC 1 cut(s) 280
MaeI CTAG 5 cut(s) 192, 254, 509, 656, 891
MaeIII GTNAC 2 cut(s) 941, 983
MalI GATC 6 cut(s) 6, 174, 190, 321, 725, 932
MboI GATC 6 cut(s) 4, 172, 188, 319, 723, 930
MboII GAAGA 7 cut(s) 407, 440, 512, 722, 755, 779, 940
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 107, 311
MluCI AATT 4 cut(s) 158, 419, 755, 832
MlyI GAGTC 4 cut(s) 50, 76, 524, 599
MmeI TCCRAC 2 cut(s) 276, 381
MroXI GAANNNNTTC 1 cut(s) 832
MslI CAYNNNNRTG 1 cut(s) 858
MspI CCGG 1 cut(s) 100
MvnI CGCG 2 cut(s) 116, 132
MwoI GCNNNNNNNGC 4 cut(s) 127, 377, 560, 1012
NdeII GATC 6 cut(s) 4, 172, 188, 319, 723, 930
NlaIII CATG 2 cut(s) 326, 561
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 941
NspI RCATGY 1 cut(s) 561
PaeR7I CTCGAG 1 cut(s) 86
PagI TCATGA 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 832
PfeI GAWTC 4 cut(s) 244, 473, 919, 950
PkrI GCNGC 6 cut(s) 115, 129, 259, 556, 911, 914
PleI GAGTC 4 cut(s) 49, 76, 523, 598
PpsI GAGTC 4 cut(s) 49, 76, 523, 598
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 195, 361, 369
PstI CTGCAG 1 cut(s) 914
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 140, 815
RsaNI GTAC 2 cut(s) 139, 814
RseI CAYNNNNRTG 1 cut(s) 858
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 6 cut(s) 114, 128, 258, 555, 910, 913
Sau3AI GATC 6 cut(s) 4, 172, 188, 319, 723, 930
Sau96I GGNCC 3 cut(s) 195, 361, 369
SchI GAGTC 4 cut(s) 50, 76, 524, 599
SduI GDGCHC 2 cut(s) 107, 311
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 910
Sfr274I CTCGAG 1 cut(s) 86
SinI GGWCC 1 cut(s) 361
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 858
SmlI CTYRAG 4 cut(s) 86, 625, 698, 997
SmoI CTYRAG 4 cut(s) 86, 625, 698, 997
SpeI ACTAGT 2 cut(s) 508, 655
Sse9I AATT 4 cut(s) 158, 419, 755, 832
SsiI CCGC 8 cut(s) 8, 114, 257, 260, 359, 554, 582, 817
SspMI CTAG 5 cut(s) 192, 254, 509, 656, 891
StyI CCWWGG 2 cut(s) 58, 372
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 5 cut(s) 24, 44, 87, 393, 933
TaqII GACCGA 1 cut(s) 342
TasI AATT 4 cut(s) 158, 419, 755, 832
TatI WGTACW 1 cut(s) 138
TauI GCSGC 3 cut(s) 116, 260, 557
TfiI GAWTC 4 cut(s) 244, 473, 919, 950
TscAI CASTG 2 cut(s) 290, 946
TseFI GTSAC 1 cut(s) 941
TseI GCWGC 3 cut(s) 127, 909, 912
Tsp45I GTSAC 1 cut(s) 941
TspDTI ATGAA 6 cut(s) 224, 423, 465, 465, 705, 801
TspRI CASTG 2 cut(s) 290, 946
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 1 cut(s) 561
XhoI CTCGAG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 832
XspI CTAG 5 cut(s) 192, 254, 509, 656, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.