Rroxscaffold_6G00399830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000497
Physical Location & Seq
Reverse (-)
21840902 .. 21841218
317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399830.1

Sequence Viewer

Length: 213 bp
ATGGATCCTCTTCCGCAAGAAGTCGACGATTACATCGGAGAGTCGATTGACCACACCCTCGGCCTCCCGGTGTACGCACGGACTCTCGAATTGAAGCTCCGGTGCTCGGAAGCGCGAAGCGACATCGAGGTTTGTATGAACGCTCGAGCTTTGAGGAAGTTTGTGGAGGAGAATCGGACAGCGGCGAGTGTGCGCATCGGTGAGTCGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.88

Weight (kDa)

4.84

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 194
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 115
AciI CCGC 2 cut(s) 14, 182
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 2 cut(s) 97, 149
AluI AGCT 2 cut(s) 97, 149
Alw21I GWGCWC 1 cut(s) 107
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 1 cut(s) 61
AspLEI GCGC 2 cut(s) 115, 195
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 144
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 107
BcnI CCSGG 1 cut(s) 68
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 68, 100
BslI CCNNNNNNNGG 1 cut(s) 106
BsnI GGCC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 14, 182
BspANI GGCC 1 cut(s) 63
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 15
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 2 cut(s) 115, 195
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 63
CfoI GCGC 2 cut(s) 115, 195
Csp6I GTAC 1 cut(s) 73
CviJI RGCY 3 cut(s) 63, 97, 149
CviKI_1 RGCY 3 cut(s) 63, 97, 149
CviQI GTAC 1 cut(s) 73
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 144
FaiI YATR 1 cut(s) 137
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
FspAI RTGCGCAY 1 cut(s) 194
FspI TGCGCA 1 cut(s) 194
GlaI GCGC 2 cut(s) 114, 194
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 1 cut(s) 63
HapII CCGG 2 cut(s) 68, 100
HhaI GCGC 2 cut(s) 115, 195
Hin6I GCGC 2 cut(s) 113, 193
HinP1I GCGC 2 cut(s) 113, 193
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 41, 82, 172, 203
HpaII CCGG 2 cut(s) 68, 100
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 25, 73
Hpy188I TCNGA 3 cut(s) 38, 109, 177
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 25, 73
Hpy99I CGWCG 1 cut(s) 29
HspAI GCGC 2 cut(s) 113, 193
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 81, 113
LweI GCATC 1 cut(s) 204
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 89
MlyI GAGTC 3 cut(s) 50, 76, 212
MnlI CCTC 6 cut(s) 18, 68, 74, 121, 147, 160
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 2 cut(s) 68, 100
MspR9I CCNGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 115
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 4
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 39
NsbI TGCGCA 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 144
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 3 cut(s) 49, 76, 211
PpsI GAGTC 3 cut(s) 49, 76, 211
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 144
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 3 cut(s) 50, 76, 212
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 107
SetI ASST 3 cut(s) 99, 132, 151
SfaNI GCATC 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 144
SlaI CTCGAG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 1 cut(s) 89
SsiI CCGC 2 cut(s) 14, 182
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 5 cut(s) 24, 44, 87, 126, 145
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.