Rh5DG347700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000497
Physical Location & Seq
Reverse (-)
47480949 .. 47482777
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG347700.1

Sequence Viewer

Length: 252 bp
ATGAACGCCCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGCGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTGGAGGATGAACTGGGAGAATTGAGGGAAGAATTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.75

Weight (kDa)

4.67

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AciI CCGC 1 cut(s) 50
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 37
AoxI GGCC 1 cut(s) 162
AspLEI GCGC 2 cut(s) 62, 64
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 104
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 47
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 9, 165
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 161, 191
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 9, 165
BseGI GGATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 195
BsePI GCGCGC 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 37
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 115
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 9, 165
BssHII GCGCGC 1 cut(s) 60
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 62, 104
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 2 cut(s) 62, 64
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 59, 170
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstUI CGCG 1 cut(s) 62
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 62, 104
CciI TCATGA 1 cut(s) 115
CfoI GCGC 2 cut(s) 62, 64
Cfr13I GGNCC 1 cut(s) 162
CviAII CATG 1 cut(s) 116
CviJI RGCY 6 cut(s) 14, 128, 164, 173, 241, 248
CviKI_1 RGCY 6 cut(s) 14, 128, 164, 173, 241, 248
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 119
FaiI YATR 2 cut(s) 111, 117
FatI CATG 1 cut(s) 115
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 47
GlaI GCGC 2 cut(s) 61, 63
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 2 cut(s) 62, 64
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 2 cut(s) 60, 62
HinP1I GCGC 2 cut(s) 60, 62
HinfI GANTC 2 cut(s) 37, 73
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 42, 143
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 170
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 2 cut(s) 60, 62
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 4 cut(s) 23, 53, 170, 176
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 2 cut(s) 197, 209
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 2 cut(s) 69, 159
MnlI CCTC 9 cut(s) 12, 25, 118, 142, 153, 163, 175, 195, 231
MseI TTAA 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 59, 170
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 119
PagI TCATGA 1 cut(s) 115
PauI GCGCGC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspPI GGNCC 1 cut(s) 162
PteI GCGCGC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 73
Sse9I AATT 2 cut(s) 197, 209
SsiI CCGC 1 cut(s) 50
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 165
TaqII GACCGA 1 cut(s) 135
TasI AATT 2 cut(s) 197, 209
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TscAI CASTG 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 17, 201, 243
TspRI CASTG 1 cut(s) 83
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.