RchiOBHm_Chr5g0040961

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
35607388 .. 35608232
845 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31943

Sequence Viewer

Length: 327 bp
ATGTGGAATGGCTTGACGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGTAACACTTGAGAAGGATGAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGGTAAGAGAAAGGGAGAAGAATAGCTTTGATTGCATTCAAACAAGCGAAAATCTAGCTCTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.51

Weight (kDa)

6.75

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 50, 150
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 2 cut(s) 58, 299
AluBI AGCT 3 cut(s) 179, 285, 317
AluI AGCT 3 cut(s) 179, 285, 317
AlwI GGATC 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 153
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 4
BfaI CTAG 2 cut(s) 44, 314
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 17
BseGI GGATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 149
BsmI GAATGC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 153
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 51, 107, 320
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 100
CseI GACGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 4 cut(s) 12, 179, 285, 317
CviKI_1 RGCY 4 cut(s) 12, 179, 285, 317
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 51, 107, 320
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 50, 150
FaiI YATR 1 cut(s) 243
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FokI GGATG 1 cut(s) 107
FspBI CTAG 2 cut(s) 44, 314
HgaI GACGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 69, 232
HpyAV CCTTC 2 cut(s) 85, 253
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 3 cut(s) 51, 107, 320
Hsp92I GRCGYC 1 cut(s) 17
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 1 cut(s) 210
MaeI CTAG 2 cut(s) 44, 314
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 6 cut(s) 82, 110, 110, 143, 167, 289
MluCI AATT 2 cut(s) 143, 220
MnlI CCTC 2 cut(s) 127, 130
MroXI GAANNNNTTC 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeII GATC 1 cut(s) 111
NspV TTCGAA 1 cut(s) 153
PctI GAATGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 246
Sau3AI GATC 1 cut(s) 111
SetI ASST 6 cut(s) 141, 181, 264, 287, 319, 326
SfuI TTCGAA 1 cut(s) 153
SgeI CNNG 6 cut(s) 25, 56, 98, 220, 237, 315
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 143, 220
SsiI CCGC 1 cut(s) 205
SspMI CTAG 2 cut(s) 44, 314
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 143, 220
TspDTI ATGAA 2 cut(s) 111, 189
Tth111I GACNNNGTC 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 2 cut(s) 44, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.