pycom15g33820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000497
Physical Location & Seq
Reverse (-)
33302292 .. 33304570
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g33820.6

Sequence Viewer

Length: 972 bp
ATGGATCTTCCGCAGGAAATCGACGACTATATCAAAGAATCGATCGACCACTCCTTGGGCCTCCCTGTGTCGACGCACACCCTCGAATTGAAGCTTCGATGCTCCGAAGAAGCGAAACGGCGGCTTCAGAATCAGTATTCACTACTCCTCTCGAAACTGAAGGAGAAAGAGCAAGTCCTGGAGCGCTATAAGGCCGAAGCGAGTATGAATGCACAAGCTTTGAGGAAGTTCGTTGAGGAGAATCAGAGATTGGCGTCAGAATGTGCGCATCTGGTGACTCAGTGCAACAAGTGGGAGAGAGAATGCTCGCTCTACGATCACGACAGAGAGGCTTTGATGGATTTTGGGAATGAGGCTGATCAGCGTGCCAAGGAGGCGGAGATTCGTGTTCAGGAGTTGGAGGACGAAGTCAGAGAGTTGAGGGATGAATTGGGGTTCTACAAGCACAAATTGGAGATGCATTTGGTTGAATCATCTGCTGAAGACACAACCATTGAAGAGAAACTACTGGATTCTGTTTTGGCAACATTGATCAATAAAGATGAAGCTGTGTCTGCACGTGCTTTTCTGGAGGCCAACAAAGGAAATGAGTCATGTGGAAGCTTGAAGCCGTCATCTCAAAAAGTTCTATCACTAGTTGCTGAGGTAAAGACACTTGAGAAGGATAAGGAACATCTAAGAATCAATCTTCGTACGGCTGAGGAAGAGGTCAAATTGCTTTTTGAAGAAAACAAAGTCCTAGATGTGGAGAACAAAAGATTACTGAGGCTATACCAGAAGGAAAGAAACCATTCTGCGTCTGGTGGAAAACATATCGACAGTGCATCAGCGAAGTCAAATAAGCGCAAATCAAGCTCTAAGATAAGCAGCCCGATTCAAGGGAAGATTGATTTCAGTGAGCAAGAACCAGCAAGACAGCCCCTATCACCCTTGCGCTGTAACTCCCCTAACTCTAGAACCTATAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

37.09

Weight (kDa)

5.96

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 267
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 1 cut(s) 71
AciI CCGC 3 cut(s) 11, 121, 377
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 3 cut(s) 110, 179, 501
AcvI CACGTG 1 cut(s) 560
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 1 cut(s) 694
AfeI AGCGCT 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 55, 745, 878
AgsI TTSAA 6 cut(s) 91, 470, 497, 607, 725, 878
AhlI ACTAGT 1 cut(s) 634
AjnI CCWGG 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 5 cut(s) 94, 218, 548, 603, 855
AluI AGCT 5 cut(s) 94, 218, 548, 603, 855
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 185
AoxI GGCC 3 cut(s) 58, 192, 573
ApeKI GCWGC 1 cut(s) 867
Asp700I GAANNNNTTC 1 cut(s) 790
AspLEI GCGC 4 cut(s) 186, 268, 846, 936
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 286, 918
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
BbrPI CACGTG 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 489
BbvCI CCTCAGC 2 cut(s) 642, 699
BbvI GCAGC 1 cut(s) 879
BccI CCATC 1 cut(s) 331
BceAI ACGGC 3 cut(s) 134, 595, 711
BciT130I CCWGG 1 cut(s) 179
BclI TGATCA 2 cut(s) 358, 531
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 3 cut(s) 635, 740, 954
BfoI RGCGCY 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 2 cut(s) 122, 868
BlsI GCNGC 2 cut(s) 123, 869
Bme1390I CCNGG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 4 cut(s) 89, 277, 447, 833
BpiI GAAGAC 1 cut(s) 489
BpmI CTGGAG 2 cut(s) 200, 590
Bpu10I CCTNAGC 2 cut(s) 642, 699
BpuEI CTTGAG 1 cut(s) 677
Bsa29I ATCGAT 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 54, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 745, 878
Bse1I ACTGG 1 cut(s) 513
BseBI CCWGG 1 cut(s) 179
BseCI ATCGAT 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 54, 369
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 3 cut(s) 55, 745, 878
BseMII CTCAG 4 cut(s) 293, 633, 690, 755
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 2 cut(s) 137, 251
BseXI GCAGC 1 cut(s) 879
BsgI GTGCAG 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 3 cut(s) 60, 194, 575
BshVI ATCGAT 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 45
BsiWI CGTACG 1 cut(s) 692
BslI CCNNNNNNNGG 3 cut(s) 55, 745, 878
BsmI GAATGC 2 cut(s) 214, 308
BsnI GGCC 3 cut(s) 60, 194, 575
Bsp143I GATC 5 cut(s) 4, 42, 316, 358, 531
BspACI CCGC 3 cut(s) 11, 121, 377
BspANI GGCC 3 cut(s) 60, 194, 575
BspCNI CTCAG 4 cut(s) 292, 634, 691, 756
BspDI ATCGAT 1 cut(s) 41
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 2 cut(s) 54, 369
BssMI GATC 5 cut(s) 4, 42, 316, 358, 531
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 2 cut(s) 54, 369
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 821
Bst6I CTCTTC 2 cut(s) 492, 699
BstACI GRCGYC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 308, 366
BstDEI CTNAG 6 cut(s) 279, 642, 677, 699, 764, 858
BstF5I GGATG 1 cut(s) 430
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 4 cut(s) 186, 268, 846, 936
BstKTI GATC 5 cut(s) 7, 45, 319, 361, 534
BstMBI GATC 5 cut(s) 4, 42, 316, 358, 531
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 374, 554, 852
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 879
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 41
BsuRI GGCC 3 cut(s) 60, 194, 575
BsuTUI ATCGAT 1 cut(s) 41
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 3 cut(s) 287, 826, 901
Cac8I GCNNGC 2 cut(s) 308, 366
CfoI GCGC 4 cut(s) 186, 268, 846, 936
Cfr13I GGNCC 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 41
CseI GACGC 3 cut(s) 82, 243, 786
Csp6I GTAC 1 cut(s) 693
CviAII CATG 1 cut(s) 594
CviQI GTAC 1 cut(s) 693
DdeI CTNAG 6 cut(s) 279, 642, 677, 699, 764, 858
DpnI GATC 5 cut(s) 6, 44, 318, 360, 533
DpnII GATC 5 cut(s) 4, 42, 316, 358, 531
Eam1104I CTCTTC 2 cut(s) 492, 699
EarI CTCTTC 2 cut(s) 492, 699
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 2 cut(s) 54, 369
Eco47III AGCGCT 1 cut(s) 185
Eco57I CTGAAG 3 cut(s) 110, 179, 501
Eco72I CACGTG 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 54, 369
EcoT22I ATGCAT 1 cut(s) 462
ErhI CCWWGG 2 cut(s) 54, 369
FaeI CATG 1 cut(s) 597
FaiI YATR 7 cut(s) 30, 189, 206, 595, 772, 813, 963
FatI CATG 1 cut(s) 593
FbaI TGATCA 2 cut(s) 358, 531
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 122, 868
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 2 cut(s) 122, 868
FspAI RTGCGCAY 1 cut(s) 267
FspBI CTAG 3 cut(s) 635, 740, 954
FspI TGCGCA 1 cut(s) 267
GlaI GCGC 4 cut(s) 185, 267, 845, 935
GluI GCNGC 2 cut(s) 122, 868
GsuI CTGGAG 2 cut(s) 200, 590
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 3 cut(s) 60, 194, 575
HgaI GACGC 3 cut(s) 82, 243, 786
HhaI GCGC 4 cut(s) 186, 268, 846, 936
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 1 cut(s) 597
Hin6I GCGC 4 cut(s) 184, 266, 844, 934
HinP1I GCGC 4 cut(s) 184, 266, 844, 934
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HindIII AAGCTT 3 cut(s) 92, 216, 601
HphI GGTGA 2 cut(s) 286, 918
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 5 cut(s) 106, 129, 246, 259, 413
Hpy188III TCNNGA 5 cut(s) 151, 320, 392, 569, 954
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 2 cut(s) 26, 76
HpyAV CCTTC 3 cut(s) 154, 655, 772
HpyCH4III ACNGT 1 cut(s) 821
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 5 cut(s) 212, 285, 460, 557, 824
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 554, 852
HpyF3I CTNAG 6 cut(s) 279, 642, 677, 699, 764, 858
HpySE526I ACGT 1 cut(s) 559
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 1 cut(s) 597
HspAI GCGC 4 cut(s) 184, 266, 844, 934
Ksp22I TGATCA 2 cut(s) 358, 531
Kzo9I GATC 5 cut(s) 4, 42, 316, 358, 531
LmnI GCTCC 2 cut(s) 107, 181
Lsp1109I GCAGC 1 cut(s) 879
LweI GCATC 4 cut(s) 89, 277, 447, 833
MaeI CTAG 3 cut(s) 635, 740, 954
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 2 cut(s) 274, 938
MalI GATC 5 cut(s) 6, 44, 318, 360, 533
MboI GATC 5 cut(s) 4, 42, 316, 358, 531
MboII GAAGA 7 cut(s) 119, 494, 509, 680, 716, 737, 895
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 86, 428, 449, 713
MlyI GAGTC 2 cut(s) 271, 599
MmeI TCCRAC 1 cut(s) 378
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 790
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 2 cut(s) 214, 308
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 374, 554, 852
NdeII GATC 5 cut(s) 4, 42, 316, 358, 531
NlaIII CATG 1 cut(s) 597
NmuCI GTSAC 1 cut(s) 274
NsbI TGCGCA 1 cut(s) 267
NsiI ATGCAT 1 cut(s) 462
PctI GAATGC 2 cut(s) 214, 308
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 8 cut(s) 38, 130, 241, 382, 470, 512, 681, 874
Pfl23II CGTACG 1 cut(s) 692
PflFI GACNNNGTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 2 cut(s) 123, 869
Ple19I CGATCG 1 cut(s) 45
PleI GAGTC 2 cut(s) 271, 598
PmaCI CACGTG 1 cut(s) 560
PmlI CACGTG 1 cut(s) 560
PpsI GAGTC 2 cut(s) 271, 598
Ppu21I YACGTR 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 177
PspCI CACGTG 1 cut(s) 560
PspGI CCWGG 1 cut(s) 177
PspLI CGTACG 1 cut(s) 692
PspPI GGNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 407
PvuI CGATCG 1 cut(s) 45
RsaI GTAC 1 cut(s) 694
RsaNI GTAC 1 cut(s) 693
SalI GTCGAC 1 cut(s) 70
SatI GCNGC 2 cut(s) 122, 868
Sau3AI GATC 5 cut(s) 4, 42, 316, 358, 531
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 2 cut(s) 271, 599
ScrFI CCNGG 1 cut(s) 179
SetI ASST 9 cut(s) 96, 220, 550, 562, 605, 648, 711, 857, 962
SfaNI GCATC 4 cut(s) 89, 277, 447, 833
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
SpeI ACTAGT 1 cut(s) 634
Sse9I AATT 4 cut(s) 86, 428, 449, 713
SsiI CCGC 3 cut(s) 11, 121, 377
SspMI CTAG 3 cut(s) 635, 740, 954
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 2 cut(s) 54, 369
TaaI ACNGT 1 cut(s) 821
TaiI ACGT 1 cut(s) 562
TaqI TCGA 8 cut(s) 21, 41, 45, 71, 84, 97, 152, 816
TasI AATT 4 cut(s) 86, 428, 449, 713
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 8 cut(s) 38, 130, 241, 382, 470, 512, 681, 874
TscAI CASTG 3 cut(s) 287, 826, 901
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 867
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 221, 441, 558
TspRI CASTG 3 cut(s) 287, 826, 901
Tth111I GACNNNGTC 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 790
XspI CTAG 3 cut(s) 635, 740, 954
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.